Trematomus bernacchii (emerald rockcod): 117494359
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Entry
117494359 CDS
T09643
Symbol
prdm2a
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben00310
Lysine degradation
tben01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
117494359 (prdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117494359 (prdm2a)
03036 Chromosome and associated proteins [BR:
tben03036
]
117494359 (prdm2a)
Enzymes [BR:
tben01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
117494359 (prdm2a)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117494359 (prdm2a)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
117494359 (prdm2a)
BRITE hierarchy
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-C2HE
zf-C2H2_11
zf-C2H2_8
zf-C2H2_3rep
zf-C2H2_6
YjdM_Zn_Ribbon
Motif
Other DBs
NCBI-GeneID:
117494359
NCBI-ProteinID:
XP_034001117
LinkDB
All DBs
Position
Unknown
AA seq
1353 aa
AA seq
DB search
MEDSPHLYISEFVENEDMDKMDINQEETNIASDMVKSPYQDTERDSNSFQCQHCERHFTT
KPGLERHMHIHTSANNDAHKYKTNISLASNLEQLHHEKVKPLDLAGSAMQLHTSSTTGSN
TPILSSGDHNAQPDKPGVSEGRHACKYCEKIFTTHTNKRRHERRIHEQHLQVTHVEKAHL
PQEENVEGICSETNQQETELVDKMAPAAVLENEVGHAEQYMLDISSNISENLSFYIDGRI
VSTSTISSCEAAEVHSGSATLVGLDALILDPTQISQVLNTDSEMSGQPLARRRTATPPLL
PQIKTELESDVVVSSSSSSLVCSIIENLFPQNTEGTVVQKERTVFLSPKLKQLLEKQDGL
KLALIADGQKPLSPVSLSVLPAGTGRFKRRTGSPPPSSPQQSPREETADSGDCEAVNTGQ
TETQHSSPAHQTANVKDDTTPPEEEPQTESWPPSTGGNSCNQQPLDLSNTVKSSEDVASA
DSALDLSFQKTNLGESELMLNFVSHAVLTEGKSIEGMMGMTLIDSLEQNISFMNPDASLL
TDFTILTSQDMMSPMQSMAEGLVYGLALPSNSLTPSPSLTPLSLQPSSPCTIAFTSHASH
TGLSTAPSLITVLAPSHISNQPIQVLAPDISQVICTENVLHFSECDLTTAFATTNSADPV
TLSQPFDPTLNLPSHMFLSDQITLNQPILESTPTSEGQFTPTVTFNDSLINSYNLTSNTV
LIECTIALEAPGSIVPAAVTLQENTAEPPVPTQMVVNHVEQEQIVSVPNPQTEDPTILMS
SIAESVTLSTTASVLSDCPAPVGESGPDPELVVNAEPSTIKEEEAADGTVSAPEIPSKTS
PSSEKAEEEDASTTPSDAQQQTFTKNFICNVCDKLFHSMKELGHHVGDHADEWPYKCEFC
VLLFSKPSALLDHRSSLHGVGKTYVCSACTKEFVYLSNLKQHQEELHPGQQCTYTEEEKG
KLRPQNYNNLTKVTTETSVPDAAEEPKVKKEEGEVDEAAEELLTTIKIMASDGAKLKGPD
VRLGINQHYPSYKPPPFPYHNRSTTGTLASATNFTTHNIPQTFSTAIRCTKCGKSFDNMP
ELHKHILTCANASDKRRYTPKRNPIPLRHFAKTQNGVLSTTNSTNGLNASNRPKHNQDSA
VNVKFKVLSKRKKKLVQRVMPQRNKSVPSSNKMSPAHVDEQQEIFVCPHCSREFTMRRSR
TKHMAVCPKKPKEVKKRKEGGISVTKENDGHLHRGAEETQQSSPLHKTRLQTSSPAKRPA
ILPVQTVLSNKRSKIIIKESTPLKQDTPTLSELPIVRTFNPSMRQYSRMQHSVKGMPIKI
TIVKPQQAAAQREERPPTPGPEDSSSSEHSPAV
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atggaggactctcctcatctatacatctcagaatttgtagagaatgaggacatggataag
atggacattaatcaagaggaaaccaatattgcatccgacatggttaagtcaccataccag
gacactgagagggactcaaactcttttcaatgccagcactgtgagagacacttcaccacc
aaaccaggcctggaacgacacatgcacatccacacctccgcaaacaacgatgctcacaaa
tacaaaaccaatatttcactagcttcgaatctggagcagttgcaccatgagaaggtaaag
cctctggatttagcaggctcggccatgcagcttcatacttcatccaccactggctctaat
actcccattttgtcctctggtgaccacaacgctcagccagacaaaccgggagtgtcagag
gggcgtcatgcttgcaagtactgtgaaaagatattcactacacataccaacaagcggcgg
catgagcgaaggatccacgagcagcacctgcaagtcacacatgtggaaaaagcccatctg
ccccaagaggaaaacgttgaggggatttgcagtgaaacaaaccaacaggaaacggagctt
gttgacaaaatggcacctgcagctgttctggagaacgaagtgggacacgcagaacaatac
atgcttgacatctctagcaatatttcagagaatcttagcttttatattgatggaaggata
gtgtcaacaagtacgatcagtagctgtgaagcagctgaggttcattctgggtctgcaact
ttagttggactggacgccctgattctagaccccacccaaatcagccaggtgttaaataca
gattcagagatgtctggtcaaccactggcaaggagaagaaccgcgacacctccgctttta
ccacaaattaaaactgaactggagtctgacgtggttgtgtcttcttcctcatcttcactt
gtatgttctataatagagaatctttttcctcagaatacagagggtacagtggtgcagaag
gaaagaactgtgtttctgtctccaaagctgaagcagctgctggagaagcaggatggcctt
aaactcgcactcatcgcagacggccagaagcctttatcacctgtctctctgtctgtgctg
cctgcagggacaggacggttcaaaagaaggactgggtctcctccaccgagctctccacag
caaagccctagagaagaaacggcagatagtggagattgtgaagctgtgaatacaggacag
acggagacccaacatagttcccctgcgcaccaaacagccaatgtgaaggatgacacaacc
ccacctgaggaggagccacagacggagagctggcctccctccaccggcggtaattcctgt
aaccagcaaccactggatctctccaacacagtcaaaagcagtgaagacgtagcttcagcc
gattcggcgctggatttgagtttccaaaaaacaaatctaggggaatctgaactgatgtta
aatttcgtttcacatgcagttttaacagaaggaaaatcaattgaaggcatgatgggaatg
accttaatcgatagtttagagcaaaatataagcttcatgaatcccgacgcctccttactg
acagacttcaccatacttacaagtcaagatatgatgagcccaatgcagtctatggcagaa
gggcttgtttatggtcttgcacttccctccaattccctgactccatcaccctccctgacc
cctctctccttgcagccatcttcaccgtgcaccatagcattcacctcccatgcttcacac
acagggctctccactgctccttcattaatcacagtgttggcaccgtcacatatttcaaac
caaccaatccaggtattagcccccgatatatcacaagtaatctgcacggaaaatgtatta
catttttcagagtgtgatttaactactgcatttgccactacaaattctgccgaccctgtc
actctttcccaaccttttgacccgactctaaatctacccagccacatgtttctctctgat
caaataacactcaatcagcctatattggagtccactcctacgtcagaagggcaattcaca
cccactgtaactttcaatgattccctcatcaactcgtataacctaaccagcaacacggtg
ttgatagagtgcacaatagctcttgaagccccggggagtatagtccctgctgcagtcacc
ttacaagaaaacactgctgagcctccagtacctacacagatggttgttaatcacgtcgaa
caggaacagattgtatcagtgcccaacccgcaaactgaagaccccactattctgatgtca
tccatcgcagaatcagtaactctatccaccaccgcctcagtgctatctgattgtcctgct
ccagttggtgaatcaggtcctgacccagagcttgttgttaacgcggagccatcgaccatc
aaagaggaagaagctgctgacggtactgtttccgcccccgaaatcccatcgaaaacctcg
ccttcttctgagaaagccgaagaggaggacgcctcaacaactcccagcgatgcccaacag
cagactttcaccaagaatttcatctgcaacgtgtgcgataagcttttccattcaatgaaa
gaactgggccatcatgtaggtgaccatgctgatgaatggccctacaaatgtgagttctgc
gtgctgctcttcagcaaaccctccgctttgctcgatcatcgatcaagcctccacggtgtg
ggcaagacttatgtttgcagtgcatgcacgaaggaatttgtctaccttagcaatctaaaa
cagcatcaggaagaattacatcccggacagcagtgtacatacacagaagaggaaaaggga
aaactaagacctcagaactacaataacttaacaaaagtcaccacggagacctcagtgccc
gacgctgcagaggaaccgaaggtgaaaaaggaagaaggggaagtagatgaggctgctgaa
gaactgttaacaactataaaaatcatggcctcagatggagccaaactcaaagggccggat
gttcgtctcggcatcaaccaacattaccccagctataagccccctccgtttccctaccat
aacagatccaccacgggcaccttagcttcagccacaaacttcaccacccacaacatccca
caaaccttcagcacggccattcgatgcaccaagtgtgggaagagctttgataacatgcca
gagttacataagcacatcctgacttgtgcgaatgccagcgataaaaggcgatacaccccc
aaaaggaatcctatcccactgcgccactttgcaaaaactcaaaatggagttctatctacc
actaactccactaacggactaaatgcgtcgaacagacccaaacataaccaagattcagca
gtaaatgtgaagttcaaggtgctgagcaagaggaagaaaaagttggtccaaagggtcatg
ccacagaggaacaagtcagtcccttcatcgaataaaatgtcacccgcacatgtggatgag
cagcaggagatcttcgtctgcccgcactgcagcagggagttcacaatgcgccgcagcaga
accaaacacatggccgtctgccccaagaaacccaaagaggtgaagaaaaggaaagaaggg
ggcatctctgtgacgaaggagaatgatggacacctgcacagaggagctgaagagacacaa
caatcctcacctctgcataaaaccagactgcagacttctagccccgctaaaagacccgcc
atcctaccagtgcaaaccgtcctgtcaaacaaaagaagtaaaataattatcaaagagagc
acaccgctgaaacaggacacgcccactctgagtgaacttcccatcgttcgcactttcaac
ccctctatgcgacagtatagccgaatgcagcacagcgtcaaagggatgcccattaagatc
accatagtgaaaccacagcaggctgcagcgcagagggaggagcggccccccaccccgggc
ccagaggacagcagcagctctgagcacagtccagcagtctga
DBGET
integrated database retrieval system
