Tribolium castaneum (red flour beetle): 658633 Help Entry 658633            CDS       T01046                                  Name (RefSeq) DNA ligase   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism tca  Tribolium castaneum (red flour beetle) Pathway tca03030   DNA replication tca03410   Base excision repair tca03420   Nucleotide excision repair tca03430   Mismatch repair Brite KEGG Orthology (KO) [BR:tca00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     658633    03410 Base excision repair     658633    03420 Nucleotide excision repair     658633    03430 Mismatch repair     658633  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:tca03032]     658633    03400 DNA repair and recombination proteins [BR:tca03400]     658633 Enzymes [BR:tca01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      658633     6.5.1.6  DNA ligase (ATP or NAD+)      658633     6.5.1.7  DNA ligase (ATP, ADP or GTP)      658633 DNA replication proteins [BR:tca03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     658633  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      658633 DNA repair and recombination proteins [BR:tca03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      658633    NER (nucleotide excision repair)     Other NER factors      658633    MMR (mismatch excision repair)     Other MMR factors      658633 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase BRICHOS Motif Other DBs NCBI-GeneID:  658633 NCBI-ProteinID:  NP_001164142 BEETLEBASE:  TC003800 LinkDB All DBs Position LG3:complement(16548523..16569048) Genome browser AA seq 756 aa AA seqDB search MFHFHFKRLVTNYRTINSCLPQLRKIAVSDGGPLQAKQSGKRPRKSSSADSSPDVKKACP SSASPEKSDKENKKNVEKSPKVASPSQTPVKSLLAKDSGENDSYNPNVAKYHPLEDATWR QGERVPYIALTRTLEEIGSISSRLKIIEILSNFFRSVILLSPDDLLPSLYLCLNKLGPAY EGLELGVAETSLMKAIASSTGRSMSQIKTDCQELGDLGLVAEQSKTNQRMLFQPARLTVF GVFEKLKEIAKLTGHASQTKKIEKIQTMFVACKKSEARFLIRSLTGKLRIGLAEQSVLQA LALACTLNPPNSKSPVKSVNVAKKIASDDFKENYDKLALILKTTYCECPNYDMIIPRLLS DGIEKLPEYCKLTPGIPLKPMLAHPTKGIQEVLHRFDGLKFTCEWKYDGERAQIHISGKD VFIFSRNQENNTSKYPDIISRIDKCKDEKVQSCVLDCEAVAWDRERKVILPFQILSTRKR KDADESSIKVQVCVFMFDLLYLNGESLVKKPFIERRNLLKEHFKEVEGEWCFVTSLDTNT MEEVQEFLEESIKGNCEGLMVKTLEKEATYEIAKRSHNWLKLKKDYLDSCGDTLDLVVIG GYLGKGKRTGTYGGFLLACYDQESEEFQSICKIGTGFSDEALQQHSEFLKNHVIQGPKPY YRFDGSHEPDHWFDSVQVWEVKCADLSLSPVHRAGIGIVDSEKGISLRFPRFVRIREDKS SEEATSSQQVASMYSNQEQVKNQAGTSNKAAEEDFY NT seq 2271 nt NT seq  +upstreamnt  +downstreamnt atgtttcatttccactttaaaagactagttacaaattaccgaacaattaattcatgttta ccccaacttagaaaaattgccgtctctgatgggggccccttgcaagcgaaacaaagtggt aagaggccaaggaagtcaagcagtgctgatagttccccagatgtcaagaaggcatgtccc tccagtgcctctccagaaaagtcggataaagagaacaaaaagaatgtggaaaagtcacct aaagtagcttcgcccagtcaaacgccagtaaaatctctgctagctaaagattctggcgaa aatgattcgtataatccaaatgttgcaaaatatcatcctcttgaagatgccacctggagg caaggtgaacgagtgccatatatcgccttaactcgaacattggaggaaattggaagtata tcaagcagattaaaaataattgaaattttaagtaactttttccgttctgtaatactccta agccctgatgatttgttgccgtcgctttatttgtgtttgaataagcttggcccggcctat gaaggtcttgagcttggtgttgctgaaaccagtctaatgaaagcaattgcctcttccact ggtcgatcgatgtcgcaaataaaaaccgattgtcaggaattaggtgaccttggtttggtc gctgaacagtcaaaaacaaaccaaagaatgctttttcaacctgcacgtcttacagttttt ggcgtttttgaaaaattgaaagaaatcgccaaattgaccggacacgcttcacaaactaag aaaattgaaaaaattcaaacaatgttcgtggcttgtaaaaaatcggaagcacgattttta atccgttcactgactggtaaattacgaattggattggcagaacagtcagttttgcaagca ctggctttggcgtgtactctaaacccgccaaattcgaaatcgccagtgaaaagtgtgaat gtagcgaaaaaaattgcctcggatgatttcaaagagaattatgataagttggctctgatc cttaaaaccacttattgcgagtgccctaattacgacatgataattccaaggttgttatcg gacggaattgaaaaattgcccgaatattgcaaactcactccagggattcccctgaagccc atgttggcgcatcctacgaaaggaatccaggaggttttgcaccgatttgatgggctgaag tttacttgcgaatggaagtatgacggggagagagctcagattcacataagcggcaaagac gttttcatatttagccgtaatcaagaaaacaacacttctaaataccccgacatcatatct cgaatagacaaatgtaaagacgaaaaggtgcaatcatgtgttcttgattgtgaagctgtt gcttgggatcgagaaagaaaagtcattcttccttttcaaattctcagtacccggaagcgt aaagatgcggatgaatcgtcaatcaaagtccaagtttgtgtcttcatgtttgatctttta tacttaaacggcgaatcattagtgaaaaaaccgttcatcgaacgtcgaaatctcctaaaa gagcatttcaaagaagtggaaggggagtggtgttttgtcacttctctagatacaaacact atggaagaagtccaagaattcctagaggagagtatcaagggaaattgtgagggtttaatg gtgaaaactttggaaaaggaagccacgtacgaaatcgccaaacgctcacacaattggctc aaactgaaaaaagactacttggacagttgtggcgatactctcgatctagtggtcattggg ggttatctgggcaaagggaaacggacgggaacctacggaggctttctcttggcttgctat gatcaagaaagcgaggagttccaaagcatttgcaagattggaactggattttcggatgaa gcccttcaacaacattctgaatttttgaaaaatcacgttattcagggtccaaaaccatat tacaggtttgatgggagtcatgagccggaccactggtttgattcggtgcaagtgtgggag gtgaaatgcgccgatttgtcactctctcccgtacacagagcaggaattggaattgttgat tctgagaagggaatttcgctacgattccctagatttgtccgtataagagaggataagtct tcagaagaggcaacatcgtcgcaacaggtcgcttcaatgtattctaaccaagaacaagtg aagaatcaagctggtacaagcaacaaagcggccgaggaagacttctattaa

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