Trinickia caryophylli: U0034_13365
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Entry
U0034_13365 CDS
T09722
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
tcar
Trinickia caryophylli
Pathway
tcar00550
Peptidoglycan biosynthesis
tcar01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
U0034_13365 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tcar01002
]
U0034_13365 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
tcar01011
]
U0034_13365 (dacB)
Enzymes [BR:
tcar01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
U0034_13365 (dacB)
Peptidases and inhibitors [BR:
tcar01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
U0034_13365 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
tcar01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
U0034_13365 (dacB)
BRITE hierarchy
Motif
Pfam:
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
WQE10778
LinkDB
All DBs
Position
1:complement(2959421..2961019)
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AA seq
532 aa
AA seq
DB search
MTPVSLFARLSSLLCYPPSRRVATTATAAVSRQPISAPRRGRAHGAFARAATALGVAVAL
AAAAPADARKLKRAPRVNVSTELPGSVARALERAHVPLASVSVVIERIGNATPLVALNAT
KAMLPASTMKLVTTYAGLSMLGPDYRWRTRAYADGTVDPDGVLHGDLYIQGTGDPKLVPE
ELVELVDKIRKAGIRGIDGALVLDKRFFAPSTRDLPPFDDDTNAPYNVGPDPLLYAFKSL
SFTLTPSGGGAVAVDVLPPLAQLKIDNALRATPGACVSTDALTPSVTPQPDGTVDALFSG
DYPLRCGPRTVNLAVLDHTAFFAGGFLALWRQQGGTFKGTTHEGAVPLGARLVATHHGPV
LSDIVRDINKFSNNVMARNLFLTIGAVAQKPPATPEKSAESIERFLHGQGLSMPSLTLAN
GSGLSRDEHVSALGLAELLQAANASPVAQSFVESLPVAGVDGTMRNRLRNEPVLGSAHIK
TGTLRDVRAIAGYVAAANGESYVVVSLINDEHAAAARAAHDALLEWVYRGMR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccgtttcgctcttcgctcgcctctcctcgctcctttgctacccgccgagccgg
cgggtagcgactaccgcgaccgccgcggtctcgcggcaaccgatttccgcgccgcgccgt
ggccgcgcgcacggcgcgttcgcgcgcgcggccacggcgctcggcgtcgccgtcgcgctc
gcggcggcggcccccgccgacgccagaaagctcaagcgtgcgccccgcgtcaacgtgtcg
accgagctgcccggctccgtcgcgcgcgcgctcgagcgcgcgcacgtgccgctggcctcg
gtgagcgtcgtcatcgaacgcatcggcaacgccacgccgctcgtcgcgctcaatgccacg
aaggcgatgctgcccgcatcgacgatgaagctcgtcacgacctacgccgggctttcgatg
ctcggccccgactatcgctggcgcacgcgcgcctatgcggacggtacggtcgatcccgat
ggcgtgctgcacggcgatctttacatccagggcacaggcgatccgaagctcgtccccgaa
gagctcgtcgaactcgtcgacaagatccgcaaggccggcatcagggggatcgacggcgcg
ctcgtgctcgacaagcgctttttcgcgccgtccacgcgcgatctgccgccgttcgacgac
gacacgaacgcgccctataacgtcggccccgacccgctgctctacgcgttcaaatcgctt
tcgttcacgctgacgccatcgggcggcggcgcggtggccgtggacgtgctgccgccgctt
gcccagctcaagatcgacaatgcgcttcgggcaacgcccggcgcctgcgtctccaccgac
gccctgacgccgagcgtcacacctcagcccgacggcaccgtcgacgcgcttttctcgggc
gactacccgctgcgctgcggcccccgcacggtcaatctcgccgtgctcgaccacaccgcg
ttcttcgcgggcggcttcctggcgctctggcggcagcagggcggaacgttcaagggcacg
acccacgaaggcgccgtgccgctcggtgcccggctcgtcgccacgcatcacgggcccgta
ctctcggacatcgtccgcgacatcaacaagttcagcaacaacgtgatggcccgcaacctg
ttccttacgatcggcgccgtcgcgcaaaagccgccggccacgcccgagaagtcggccgag
tcgatcgagcgctttctgcacgggcaagggctgtcgatgccttcgctgacgctcgccaac
ggttcggggctttcgcgcgacgagcacgtaagcgcgctcggccttgcggagctgctgcag
gccgcgaacgcaagccctgtggcccagtccttcgtcgaatcgctgcccgtggcaggcgtc
gacggcacgatgcgcaaccgcctgcgcaacgagcccgtgctcggcagcgcccacatcaag
acgggcacgctgcgcgacgtgcgggcgatcgcaggttatgtcgcggccgcgaacggggaa
agctacgtcgtcgtaagcctcatcaacgacgaacacgccgcagccgcgcgcgcggctcat
gacgcactgctcgaatgggtctaccgcggcatgcgctga
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