Trinickia caryophylli: U0034_20765
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Entry
U0034_20765 CDS
T09722
Name
(GenBank) type VI secretion system protein
Organism
tcar
Trinickia caryophylli
Motif
Pfam:
IcmF-related_N
AAA_16
AAA_29
AAA_5
Motif
Other DBs
NCBI-ProteinID:
WQE14988
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Position
2:334746..338924
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AA seq
1392 aa
AA seq
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MTAVFFALLAVGTLLGLVAALLIWRARAKGPSQAADTEGRLGRWIGSLVAALDYASTRRA
WRYRLPWVLVLGEPGSGKTSLVLSASDLLQPQPDERYASLGIADASWSVMTGGALVDVAG
QAWASAGPAGPRRTAGEEQASGATGGSASATSAGATAAVPPDSQKSRWGTLLGKLVDLRP
ERPVDAVILTVSARMLLGADLAELERSAAGAYRRLCDLQDTFGFVLPVSVVVTQCDRVDG
FPAFWRAQPAGLLGQIFGWSASGLARNDTPAEWCEAAFATVGDELRALQIDAAARDEDPS
SAEARDGMLLFPTFLQALEAPLGQWLSTAFRATLDRPGHLFRGIFFTGDIEGSGVAPRRD
VSFVTGLLKDKVFAERGNARVVRASAWSRNRYLRGFQIAALTVAAVLAVGLGASAVTLHD
KVARLDRALVQLRGEPAYAGGVCPSAGKISSLLLAVRELDTASFHWANPWSWFGQPLRRG
AAQVVAGHVFADVILPGLACRLSVRAQNLLANGQAPLAAHQAASANLREARSTLTVQLRA
LTELEAGLATYEEVAKPFSGAATEDDLRRFARLLNFAYGLPASLVRPEETGSILAASLSW
ASTDARPTLPDDAARNYARQLGQMETRLRDALVLEAGAGQQLLLELGRGRGDAAAQTNEL
VWWLTWTRDNWLGRMSANAPRNLCAQLRADLAQQVRQLVLTDASSGHGAAGTAAAASPYN
ALLDETATIFSPQRCDVPVYARLDAIAVPPYDPLIVHTQGERAFNPAFTNEFAGLMALAK
LPFMQVGHLREPFVCDAAALGWDADALGDATAYIAQYRGFRQRFGLAQGAAGPQPLYAQI
ASRQLESALNHALNRAQRPKPKGSNVWPAQSGTNALAPAPFDEQALAQTSRDLAGGLGTL
VSIERAYQAFGFAGSFAALSGCLQQFADNRLSTVGSLAVQSQLYRPAASDTGPEFFDLGT
IDATRDYLARQVARAQVLASYAAPFVTLAQNSGTARGNDPRMQTTAYWSNSIAEVNRYVP
SNDPASEMGQLATLFVDRLNGMTAQNCGARLQNLAGASGANNLFASVRRNLIGYTELRCQ
GSDADAFSQLFALFDATLAGRYPFGESGAPEASLAAVRDFFAQYDLQSATLRAKLPMLPR
PQQAPVRTFLDRLDEARRFLAATLRADGSLAVRVQPTFNVRPASERGADQIVRWQLSTAA
QSAAYPNSVAALDWLAGQPLTLELTWADLSRFAPYVDPGVPDAPAVEGRRATFSAQGNWA
LMRVVQGHAADRGASPADGITLRFTVPIVVAEGAPVDASAGAAARRGPRPAATSFAQLML
NLRLEGTDPTSHAAVALKLPVFPARSPTLQPAASALRTSAGGPPIPSVPPLPPLQTLPPA
VDVQTSSAASAD
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgccgtatttttcgcgctgcttgccgtgggcaccttgctcgggctcgtcgccgcc
ttgctgatctggcgggcgcgagccaaggggccgtcacaggcagcggatacggaaggccgt
ctcggacgttggatcggctcgctcgtcgccgcgctcgactatgcgagcacgcggcgcgcg
tggcgctatcggctgccgtgggtgcttgtgctcggggaacctggctcgggcaagacgagc
ctcgtgctctctgcgagcgatctgctgcagccgcaacccgacgagcgttatgcatcgctc
ggcatcgcagatgcaagctggtccgtgatgaccggcggcgcgcttgtggatgtggccggg
caggcatgggcgagtgcagggccagcggggccgcggcgcacagcaggcgaggagcaggcc
tccggcgctacgggaggctcggcctctgcgacgtcggccggggcaacggcggccgtgccg
ccggactctcaaaagtcgcgctggggaaccttgctcggcaaactcgtggatttgcgcccg
gagcggcccgtcgacgccgtgatactgacggtttccgcgcgcatgttgctcggcgccgac
ctggcagagctcgagcgatcggctgccggggcctaccgtcgcctttgcgatctgcaggac
acgttcggtttcgtgctgccggtaagcgtggtcgtgacgcagtgcgatcgcgtcgacggt
ttccccgcgttctggcgcgcgcagccggccggcttgctcggccagatattcggctggtcc
gcgtccgggcttgcgcgcaacgacacgccggccgaatggtgcgaagccgcgtttgccacg
gtcggcgatgaactgcgcgcgctgcagatcgacgcggcggcgcgcgacgaagatccgtcg
agcgccgaggcgcgcgacggcatgctgctctttcccacattcctgcaggccctcgaggcg
ccgctcgggcaatggctgagcacggctttccgggcgacgctcgaccgtccggggcatctc
tttcgcgggattttctttaccggcgacatcgaaggcagcggcgtggcgccgcgccgcgac
gtgtcgttcgtcaccgggttgctcaaggacaaggtcttcgccgagcgcggcaacgcacgc
gtggttcgcgcctccgcgtggtcgcgcaaccgctacctgcgcgggttccagatcgcggcg
ctgacagtggccgccgtgctcgcggtgggcctcggcgcttcggcggttacactgcacgac
aaggtcgcgcgtctcgatcgcgcgctcgtgcaactgcgcggcgagcctgcctatgccggc
ggggtgtgtccgagtgcgggcaagatctcttcgctgctgctggccgtgcgcgaactcgat
acggcgtcgtttcactgggccaacccgtggagctggttcggtcagccgctacgcagaggg
gcggcacaggtggtggcggggcacgtatttgcggatgtgatcctgccggggctcgcgtgc
cgcttgtccgtgcgcgcgcaaaatctgctcgccaatggccaggcccctttggctgcgcac
caggccgcgagcgctaatctgcgcgaggcacgctcgacgctgaccgtgcagttgcgcgcg
ctgaccgagctggaggcgggcctcgcgacgtacgaagaggtggccaagccgttctcgggg
gcggcaacggaagacgacctcaggcgtttcgcccggctgctcaatttcgcgtacggtttg
ccggcatcgctcgttcgccccgaggagaccggcagcattctcgcggcttcgctgagctgg
gcgtcgaccgacgcgcggccgacgctgcccgacgacgccgctcgaaactacgcccgacaa
ctcgggcaaatggagaccaggctgcgcgatgcgctcgttctggaggccggcgcggggcag
caactgttgctcgagctgggccgggggcggggcgacgcggctgcgcagacgaacgaactc
gtctggtggctcacgtggacgcgcgacaactggctcgggcggatgtcggccaacgccccc
cggaatctctgtgcgcaactgcgcgccgacctcgcgcaacaggtccgccaactcgtgttg
acggatgcgtcgtcggggcacggcgcggcaggcaccgcggcggcggcctcgccctataac
gcattgctcgacgagaccgccacgatcttttcgccacagcgttgcgacgtgcccgtgtat
gcgaggctcgatgcgattgcggtaccgccatacgatccgctgatcgttcatacgcagggc
gaacgtgccttcaatccggcatttacgaacgaattcgcaggcttgatggcattggcgaag
ctgccgttcatgcaagtgggccatcttcgcgagcctttcgtctgcgacgccgctgcgttg
ggctgggacgcggacgcgctcggcgacgcaaccgcatacatcgcccaatatcgtggtttc
cggcaacgcttcgggctggcgcaaggcgcggccggcccgcaaccgctctatgcgcagatc
gcctcgcggcagctcgaaagcgcgctcaatcacgcactcaatcgtgcgcagcggcccaag
ccgaaaggctcgaacgtatggccggcgcaaagcggcacgaacgcgctcgcgccagcgcca
ttcgacgagcaggcgctcgcgcagacgagccgtgaccttgcaggcggactcggcacgctg
gtttcgatcgagcgcgcctatcaggcgttcggtttcgcgggcagttttgcggcgctctcc
ggctgcctgcagcagttcgccgacaaccggttgtcgacggtcggcagcctcgcggtgcaa
agtcagctctatcggccggccgcgagcgatacgggccccgagttcttcgatctcggcacc
atcgatgcgacgcgcgattatctggctcgtcaggtcgcgcgtgcccaggtgttggcttcg
tacgcggctccgttcgttacgcttgcgcaaaactccggtacggcgcgcggcaacgacccg
cgcatgcagaccaccgcgtattggagcaactctatcgccgaggtgaaccgctatgtgccg
tcgaacgatccggcgagcgagatggggcagctcgcgacattgttcgtggaccgcctgaac
ggcatgacggcgcaaaactgcggagcgcgtctgcaaaacctcgcgggcgcttccggagcg
aacaacctctttgcatcggtacgtcgaaacctgatcggctacacggagttgcgctgccag
ggcagcgatgccgatgcgttctcgcagctcttcgctctcttcgatgcgacgctggccgga
cgttacccgttcggagaaagtggcgcgcccgaagcttcgctcgcggccgtgcgggacttc
ttcgcgcagtacgacctgcaaagtgcgacgctgcgcgcgaagcttccgatgttgccgagg
ccgcagcaggcaccggtgcgaaccttcctcgaccggctcgacgaagcgcggagattcctc
gccgcgacattgcgcgcagacggcagcctggccgtgcgtgtgcagccgacgttcaacgtt
cggcccgccagcgagcggggcgccgatcagatcgtgagatggcaactgagcaccgcggcg
cagtccgccgcctatccgaacagcgtggcggcgctcgactggctggccggacagccgctg
acgctcgagctgacgtgggccgacctgtcacggttcgcaccctacgtcgatcccggtgtg
ccggatgcgccggcggtagaagggcgccgggcgacgttctcggcccagggcaattgggcg
ctcatgcgggtcgtgcagggccatgccgcggatcgcggcgcctcgccagcggacggcatc
acgttgcgcttcaccgtgccgatcgtcgtcgccgagggcgcgccggtcgacgcatctgcg
ggcgcggcggccaggcgggggccgcgcccggcggcaacgagcttcgcgcagctgatgctc
aacctgcggctcgagggcacggacccgacgagccacgcggctgtcgcgctgaagctgccg
gtgtttccggcgaggtcgccgactttgcagcctgccgcatcggcgctgcgcacatcggcg
ggcgggccgccgatcccgagcgtgcctccgctgccgcccttgcaaacgctgccgcccgct
gtcgacgttcagacgtcgagtgccgcgtcggccgattga
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