KEGG   Thermofilum adornatum 1505: TCARB_0087
Entry
TCARB_0087        CDS       T03526                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tcb  Thermofilum adornatum 1505
Pathway
tcb03030  DNA replication
tcb03410  Base excision repair
tcb03420  Nucleotide excision repair
tcb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tcb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TCARB_0087
   03410 Base excision repair
    TCARB_0087
   03420 Nucleotide excision repair
    TCARB_0087
   03430 Mismatch repair
    TCARB_0087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tcb03032]
    TCARB_0087
   03400 DNA repair and recombination proteins [BR:tcb03400]
    TCARB_0087
Enzymes [BR:tcb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TCARB_0087
    6.5.1.6  DNA ligase (ATP or NAD+)
     TCARB_0087
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TCARB_0087
DNA replication proteins [BR:tcb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TCARB_0087
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TCARB_0087
DNA repair and recombination proteins [BR:tcb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TCARB_0087
   NER (nucleotide excision repair)
    Other NER factors
     TCARB_0087
   MMR (mismatch excision repair)
    Other MMR factors
     TCARB_0087
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: AJB41165
UniProt: A0A3G1A5C5
LinkDB
Position
79576..81387
AA seq 603 aa
MSQTGEDLPYSVLADFYEKIESITSRIAMTDYLVALFKKTPPSIIDKVIYLTQGQLRPDY
EGVELGVAEKLALRALARATGRHVKDVEDMYKQTGDIGLLAEKLMSTSRTGGLLDFIGTM
EPKKELTVSQVYNALLRIAQATGEGAQETKINTLVSLLKDAKPKEARYILRTVLGRLRLG
IADMTILDALAIAFTGSKNTRDIVEKAYTKHPDLGYIAKLLASQGIDAVASLKIEVGVPI
LPMLAERLSDPDEILQKLGGKCLAEYKYDGERVQAHKKGEKVWLFSRRLENITHHYPDVV
EYMKQLKADEAIVEGEIVAYNPDTGEMLPFQELMHRRRKYDVDKAMKEYPVRVYLFDIVY
LSGRELIDEPLPDRRQNLEKIVPEGQENLLLSSAKIIDNSKDLLHFFEQAISDGCEGIMC
KSIGPDSVYQMGARGWLWIKFKRDYRLEMTDTVDLVVVGAFKGRGKRAGTYGALLMAAYD
PETDTFKTVCKVGSGFTDEDLANLPKMLEPYILPHRHPRVFSKMEADVWFVPAVVLEIIG
AEITLSPLHTCALNKIEEGVGLAIRFPRFTGRYRFDKKPEQATTEAELIEMYKSQRKTII
QQS
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgagtcaaaccggagaagatttaccatattcggttctagcagacttctacgaaaaaatc
gagtctataaccagcaggattgccatgacagattaccttgttgcacttttcaagaaaaca
ccccccagcataattgacaaggtcatatacctgactcagggacagctccgtccagactat
gagggcgtagagctaggagtagccgagaaactggctctaagagctttggcaagagccacc
ggtagacatgtgaaagacgtagaagatatgtataagcaaactggggacatagggcttctc
gccgaaaaactcatgtctacttcccgcaccggtggactactagacttcattggaaccatg
gagcccaaaaaagagctaacagtttcacaagtctacaacgcgctcctaagaattgcgcag
gcaaccggtgaaggagcccaggaaacaaaaataaatacgcttgtatctttgcttaaggat
gctaagccaaaagaagcaagatatattcttcgaacagtcctgggaagactaaggctaggc
atagctgacatgacgatacttgacgcactggcaatagcctttacagggtctaaaaatacc
agggacatagtcgagaaggcatacactaagcatcccgacctcggctacatagcaaagttg
ctagcctcacagggaatagatgcggtggcatcgctcaagatagaagtaggtgtcccaata
ctaccaatgctggcagagagactaagcgacccagacgaaatactgcaaaagcttggcggc
aaatgtcttgcagagtacaagtatgacggggaaagagtccaagcccacaaaaaaggcgaa
aaggtctggctgttcagcagacgcctagaaaacattacacatcactatccggacgtcgta
gaatatatgaagcaacttaaagcggacgaagcgatagttgaaggagaaatagtagcctac
aaccctgacacaggcgaaatgctacctttccaggaactcatgcacaggagacgaaaatac
gacgtagacaaagccatgaaagagtatcctgtaagggtctatctctttgatatcgtctac
ttgtctggacgagaactcattgatgaacctcttcccgacaggagacagaatcttgaaaaa
atagttccagaaggccaggaaaacctcttgttaagtagcgctaaaatcattgacaactcc
aaggatcttttgcacttctttgaacaggctataagtgatggatgcgagggtataatgtgt
aaatccattggtccggacagcgtctaccagatgggtgcaagaggctggctatggataaaa
ttcaaacgggactataggcttgagatgaccgacactgtagacctggtcgttgtcggcgcc
ttcaagggaagaggcaaaagagcggggacttatggtgcgttgctcatggcagcatacgat
cctgaaacagacaccttcaagactgtatgcaaggttggttcaggctttacagatgaggat
ctagcaaacctgcctaaaatgcttgaaccatacatcttgccgcataggcatccaagagta
ttttccaaaatggaggcagacgtctggtttgttccagccgttgtccttgaaataattggc
gcggaaataactctaagcccattacatacttgtgcattaaacaaaatagaagaaggcgta
ggtctagccataaggtttccacgcttcactggtagatacaggtttgacaagaagccagaa
caagctacaaccgaggccgagctaatcgagatgtataagtcccagagaaaaacaataatc
cagcagtcctag

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