Tigriopus californicus (tidepool copepod): 131886278
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Entry
131886278 CDS
T09700
Name
(RefSeq) protein transport protein Sec24C-like isoform X1
KO
K14007
protein transport protein SEC24
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131886278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcf04131
]
131886278
Membrane trafficking [BR:
tcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
131886278
BRITE hierarchy
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Sen15
PaREP1
Motif
Other DBs
NCBI-GeneID:
131886278
NCBI-ProteinID:
XP_059090544
LinkDB
All DBs
Position
9:complement(9536166..9540546)
Genome browser
AA seq
1059 aa
AA seq
DB search
MMPPQPNGPPQYPQGPPNTMARPPGPPTNLGPLRMNAGPMGPPQMSKMGPPARPALPPMS
NGQMGPAPPGPPMMNRPGLPPASAPAGGPNLGGGPAPYRPAGPPGSQAGPPPSSMGGPMP
ARPGVPPGQMGPPSRPGMPVMPNGAQFGPPRHGSGPPHPASQPGPMGAAPGGPPRPQMSG
GQFGPPPPNGMGPPAGPPGMSGPPRPGGYPPHPSGPASGYPAASPAPGPGYPPAPQGPPG
MGGYPPAPANGGYPPQPPGPGQAPGPGMNQMNPQYPGAQSPRRALDPDQMPSPIHVMEED
QNNNKGYFETREKGQTPPLVTTDFICRDFGNASPRFIRSTMYNVPATTDMMKQTGVPFGL
VIAPFAPVQEGEIEPPVSDFGPTGPVRCHRCKAYMCPFMQFIDGGRRFQCVFCKATTEVP
QEYFQHLDHNGQRLDHYQRPELCLGAYECLATTDYCRDSKEPNVPGIIFAIDVSYPMMKE
GVVQLICRNMKRMLHNLPSDTNCDKQERPRVGFMTYDSKIHFYNINKGLSQPQQLNVGDV
EDMFVPLVEGFMVKWEDSEQVIDSLMEQIPLMYGETRETETVLGPVIQAGKEAFKAANAA
GKLIIFHHNLPVAEAPGKLKNRDDRKLLATEKEKTVLTPQTKFYNEVGQECVAVGCSVDL
FLFNNAYIDVATLSQVSRMTGGQVFKYTYFLPEIDGERFLRDLEYNLKRPIAFDAIMRVR
TSTGVRPVDFFGSFFMANTTDTELAAINGDAAVTCEIKHDDKLTEEDGVYIQAAILFTSC
SGQRRLRVLNLSLNCGSNMAEVFRTCELDTVVNFIAKQSISRLMDSNPKAVKDQLISNCA
NILACYRKNCTTSSSMGQLILPECLKLLPLYTNCLIKSDALSGGTDVGCDDRAYLMNAVS
SMDVASTVVYFYPRLFAIHDVSPSETGLPNQTRCSIEKIRDDGVYLLENGLFLFMYIGLS
VDPVWIQEVFGVSLPQQINLDQSELEERNNPLSKRVKDIVETIQSQRSRHMRLVVVRQRE
KLDILFRHYLCEDRSGNDNCFSYVDFLCHMHKEIRALLG
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccccacaacccaatggaccgccccaatatcctcaagggccacccaacactatg
gctcgtccaccggggccccccacgaatctgggtccgctccgaatgaatgctggacccatg
ggaccacctcagatgagtaagatgggtccacccgcgcgtccggctctcccgcccatgtcc
aatggtcagatgggacctgcgccccctggacctcccatgatgaaccgtccgggtttgcca
cccgcctcagcgcccgccggagggccgaatttgggtggaggtcctgccccctatcgcccg
gcgggaccgcccggatctcaggccggaccaccaccctcatccatgggtggacccatgcca
gcccgacccggtgtcccccctggtcaaatgggtccgccatctcgtccgggtatgcccgtt
atgcccaatggtgctcagtttggcccacctcgacacggttccggtccgccccacccagcc
tctcaaccgggtcccatgggtgccgcccccggtggtccgcctcgaccccaaatgagcggc
ggccaatttggccctccgcccccgaatggaatgggaccgcccgccggcccacccggcatg
tctggcccacctcgacccggcgggtatccaccccatccatctggacccgcttcgggctat
ccagccgcttcacctgctcccggcccgggttatcccccggccccccaggggccacctggc
atgggcggatacccgcctgcgcccgcaaatggaggttatccgcctcaacctccgggacca
ggccaagcaccgggccctggtatgaatcaaatgaatcctcaataccctggggctcagagt
ccgcgccgcgcgttggatccggatcagatgccgtcgcccattcacgtaatggaggaagac
caaaataacaataaaggctatttcgaaacccgtgagaaaggtcaaacgccgcccctcgtc
acaaccgacttcatttgtcgcgatttcggcaacgccagtccccgcttcattcggtcgacc
atgtacaacgtgcctgccaccacggacatgatgaaacaaaccggcgtcccattcggtttg
gtcattgcccctttcgcccccgtgcaagagggtgaaattgagcctcccgtgtccgacttt
ggtcccacgggcccagtccggtgccaccgttgcaaggcctatatgtgccccttcatgcaa
ttcatcgacggaggacgacgatttcaatgcgtcttttgcaaggccaccactgaagtaccc
caagaatatttccaacacctggatcacaatggacagaggctggatcactaccagagaccc
gaactgtgcttgggtgcctacgaatgtttagccaccacggactattgccgagattccaag
gagcccaacgtccccggaatcatcttcgccattgacgtgtcctatcccatgatgaaagag
ggcgtggttcaactcatttgccggaatatgaagcgcatgttgcacaaccttccgagtgat
acgaattgtgataagcaggagcgaccgcgtgtgggctttatgacgtatgattcgaagatc
catttctacaatatcaacaaaggactctcccaaccccagcagctcaatgtgggtgacgtc
gaagacatgtttgtcccattggtcgagggtttcatggtcaaatgggaggattcggagcaa
gtgatcgattcactcatggagcagatcccactcatgtatggcgagactcgggaaaccgaa
acggtcctcggacctgtcattcaagccggcaaagaggctttcaaggctgccaatgccgcc
ggaaagttgatcatattccatcacaacttgcctgtggctgaggcaccaggaaaattgaag
aatcgcgatgatcgaaagttacttgcaaccgagaaagagaaaaccgttctcactccacaa
accaagttctacaacgaagtgggacaagaatgcgtggccgtgggatgctctgtggacttg
ttcctgttcaacaatgcctacatcgatgtcgccactctcagccaggtgtctcgaatgacg
ggaggtcaagtattcaagtacacctatttcttacccgaaatcgacggcgaacgctttctt
cgggatctggaatataaccttaaaagaccgatcgccttcgatgctatcatgagagttcgg
acctcgacgggagtgaggccagtcgatttctttgggagtttcttcatggccaacaccaca
gatactgaattggccgccatcaatggtgatgctgccgtgacatgtgaaatcaaacacgac
gacaaactcacagaagaagatggagtctacattcaagcagccattctttttacttcgtgt
tcgggccaacgtagacttcgagtcttgaatctgtccttgaactgcggtagcaacatggct
gaagtgtttcgaacatgtgaactagacacggtggtcaatttcattgccaagcaatctatc
agtcgactaatggattccaatcctaaagccgtcaaggatcagctcatctcgaattgtgcc
aatatcttggcttgctaccgaaagaactgtacgacttcttcgtcaatgggtcaactcatc
ctgcctgaatgcctgaaactgcttccattgtatacaaactgtctcattaaatcggatgcc
ttgagtggtgggacagacgttggatgtgatgaccgagcttatttgatgaacgctgtatca
agcatggatgtggcctcaactgtggtttatttttatccaaggctcttcgccattcacgac
gtgagcccaagtgaaactgggttgcccaatcaaacccgatgctcgatagagaaaatccga
gacgatggtgtctatctcctcgaaaatgggctgttcctttttatgtatattgggctgtcc
gtagatcccgtctggatacaagaggtctttggcgtatctctgcctcagcaaatcaattta
gatcaaagtgaactcgaggaaaggaacaaccctctttcgaaacgagtgaaagatatcgtg
gagaccatccaatcccagcgatcccgacatatgcgattggtggtggttcgtcagcgtgag
aagttggacatcctgttccgccattatctctgcgaggatcggagtggcaatgataactgc
ttcagctacgtggacttcttgtgccacatgcacaaggagatccgtgccctccttggctaa
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