Thermobacillus composti: Theco_3019
Help
Entry
Theco_3019 CDS
T02394
Name
(GenBank) ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tco
Thermobacillus composti
Pathway
tco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Theco_3019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tco03400
]
Theco_3019
Enzymes [BR:
tco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Theco_3019
DNA repair and recombination proteins [BR:
tco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Theco_3019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGA59080
UniProt:
L0EIU3
LinkDB
All DBs
Position
complement(3158068..3159021)
Genome browser
AA seq
317 aa
AA seq
DB search
MEPIVPFEPIAADDIPAGPQWAAQIKWDGVRMLVYFDGAATKLVNRRLHERTMQYPELAD
ARRYCRARSAILDGEIVAFDAARPSFHEVMRRDGIRNARAVPAAVREIPVTYMVFDILYL
DGEWVTGRSLEERQRLLARAVEPDGRVRLVENTDDGAKLFDVMRKHGMEGIVVKDLASTY
AVGGKDGRWRKIKVRRDLTAAVGGVTCGGGRVNALLLGLYDGQGRLHYIGHAGSGRLTGR
DWADITAAAELLRTPDCPFAAKPPRSAGAVWIRPMLTAKVRYLEWTAGRTLRQPVIEVVS
AGPGTDCTFDRLDEPTV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgatcgtgccgttcgagccgattgcggcggacgacattccggcggggccgcag
tgggccgcccagatcaaatgggacggcgtgcgcatgctcgtctacttcgacggcgccgcc
acgaagctcgtgaaccgcaggctgcacgagcgtacgatgcaataccccgagctggccgat
gcgcgccgctactgccgggcgaggtcggccatccttgacggcgagatcgtcgcctttgac
gccgcccgcccgtccttccacgaagtgatgcgccgggacggcatccgcaacgcgcgggcc
gtgcccgccgccgtccgcgagatcccggtcacgtacatggtgttcgacatcctgtacctg
gacggcgaatgggtgaccgggcgcagcctcgaagagcgacagcggctgctggcccgcgcc
gtcgaacccgacggccgcgtccggctcgtcgagaacacggacgacggcgcgaagctgttc
gacgtgatgcggaagcacggcatggaaggcatcgtcgtgaaagacctcgccagcacctac
gcggttggcggcaaggacggccgctggcgcaagatcaaggtgcggcgcgacctgacggcc
gccgtgggcggcgtcacctgcggcggcggccgggtgaacgcgctgctgctcggcctgtac
gacgggcagggacgcctgcactacatcggccatgccggatcgggccggctcaccggccgg
gactgggcggacatcactgccgcggcggagttgctccgcacgccggactgcccgttcgcg
gcgaagccgccgcgcagtgccggcgcggtctggatccggccgatgctgacggcgaaggtc
cgctacctcgaatggacggccggacggacgctccggcagccggtgatcgaggttgtcagc
gcgggtccgggaacggactgcacgttcgaccggctcgacgaaccgacggtttga
DBGET
integrated database retrieval system
