Thermobacillus composti: Theco_3020
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Entry
Theco_3020 CDS
T02394
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tco
Thermobacillus composti
Pathway
tco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Theco_3020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tco03400
]
Theco_3020
Enzymes [BR:
tco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Theco_3020
DNA repair and recombination proteins [BR:
tco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Theco_3020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AGA59081
UniProt:
L0EHB3
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All DBs
Position
3159187..3160086
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AA seq
299 aa
AA seq
DB search
MAVKTTGTITVQGERLSISNPDRVLWPEAGITKLRYLEKLAELAPHLIRHCEGRYLTVIR
YPNGIHGKSFYQKNAPEPLPPFVRTAEQNGIRYVVLDSLPTLIWLGNLACLEFHASFDRI
GELLRPAEWVIDLDPSREEEPRIMEAAWLAGELLRSLGIASVPKTSGATGVQIVVPVEPI
LTFDELRAIGRFVGEYLVGKYPKLFTIERLKKNRGDLIYFDYLQHYAGKTLSAPYTPRAR
PAASVSTPLTWDEVRADVRPADFNLHTIGPRLARLGDLLERAPKQNLRPIFEFIRGRQG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcaaaacgacgggaacgatcacggtgcagggcgagcggctgtccatcagcaat
ccggaccgggtgctctggccggaagccggcattacgaaactgcgctatctggagaagctg
gcggagctcgctccgcacctcatccggcactgcgaagggcggtatctgaccgtcatccgg
tacccgaacggcatccacggcaagtctttctaccagaagaacgccccggagccgctgccc
cccttcgtgcggacggccgagcagaacggcatccgctacgtcgtgctcgattcgctgccg
acgctcatctggctcggcaacctcgcctgtctcgaattccacgcctcgttcgaccggatc
ggcgagctgctgcgaccggcggaatgggtgatcgacctcgacccgtcacgggaggaggag
ccccgcatcatggaagcggcatggctcgcgggggagctgctccgctccctcggcatcgcg
tccgtgccgaagacgtccggcgcgacgggcgtgcagatcgtcgtgccggtcgagccgatt
ctcacgttcgacgagctacgcgctatcggccggttcgtcggcgagtatctggtcggcaag
tacccgaagctgttcaccattgaacgactcaaaaagaaccgcggcgacctcatctacttc
gattacctgcagcattacgccggcaaaacgctgtccgccccgtacacgccgcgcgcacgt
ccggcggcgtccgtctcgacgccgctcacgtgggacgaggtgcgggcggacgtccgcccg
gcggatttcaacctgcacacgatcgggccgcgcctcgctaggctgggcgatctgctggag
cgggcgccgaagcagaacctccggccgatcttcgaatttatccgcgggcgccaggggtga
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