Trypanosoma cruzi: 511305.10
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Entry
511305.10 CDS
T01012
Name
(RefSeq) 5'-3' exonuclease XRNB
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tcr
Trypanosoma cruzi
Pathway
tcr03008
Ribosome biogenesis in eukaryotes
tcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
511305.10
09123 Folding, sorting and degradation
03018 RNA degradation
511305.10
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcr03021
]
511305.10
03019 Messenger RNA biogenesis [BR:
tcr03019
]
511305.10
03009 Ribosome biogenesis [BR:
tcr03009
]
511305.10
03016 Transfer RNA biogenesis [BR:
tcr03016
]
511305.10
Transcription machinery [BR:
tcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
511305.10
Messenger RNA biogenesis [BR:
tcr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
511305.10
Ribosome biogenesis [BR:
tcr03009
]
Eukaryotic type
Pre-60S particles
RNases
511305.10
Transfer RNA biogenesis [BR:
tcr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
511305.10
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
SpoIIE
Motif
Other DBs
NCBI-GeneID:
3536283
NCBI-ProteinID:
XP_806311
UniProt:
Q4CW10
LinkDB
All DBs
AA seq
979 aa
AA seq
DB search
MGVPKFASWLTKKYPEMVSDVIPADVHGLYIDLNGLIHPCCHSERDPSVAARPEEEKLQC
ICCEVEVLLATVRPHDILYIATDGVAPRAKMNQQRARRYMSRAKIMSSGTEVVEEVVREF
TPNEMAEADDDLDDIRQLLMQDALYGGVMVQDDTTETLNGVANIADSLTPVTPCHDKSNN
HEAHAETWAAFDGLTDGTMEVTEFDSNCISPGTAFMVKVTNAILTMVQDKLTNGDPLWAG
LRVVFSGANTPGEGEHKIVDFLRTQSSYPGFNGKGAHVIAGLDADLIFLSLSLHIPHILL
LRDRDRNPYAVRMHDRHREKRQVQPHKLHTESEKNTPDLARELEDKTEGNEIHVDADNEN
SKNSSSEGSGQRKPPGVLEANTNYEYYDIDTLGSCLVSELHGLCQLKNFTPNNKRAFSPE
LLVSSNGYHFYRHAGCADGSLRSVSKGEDKSHHDKESWRNFLPCASQANSKVIDDFIVMG
MLMGNDFLPRLPGAFCGESVMDNLLELYVSNVLPYGFLTSGYHEIYLPQLQRLLRSYAKI
ETVKFRRFALSNNKMTPKEAAEPLYSPLDEQWRQTYLTSTGLTGNLEEACKKYVEGLRFV
WRYYSGNASTCSWSWYYPFHHAPFALDIADYLQRCDLTNLPSPPLETTPPDMFLQLLCIL
PPTSHALLPAVLGDVMLNPPEELRETFPSMWRVDYTAAYGKDYLAEVLLPFANVSELREL
VESSRPYFTKEEQERGRQVNYHLVLGSRASGFEINGNICELNANDAAIWDLQREGLRYMQ
LWDSPPERGRPKTYSCTTLVPWVTCDARGRVHKRERLSRSERRKHRDDVLSDAAVTLINK
GPSFAAYLFGFTASFLLMAMTLFPWLSLSILQVLAVNLTAVAFSFFIGIAVHDPIVGSGV
QRNNIRFTFVDWLCAGCLSLNFSCNDKCFCCRLPFDSKRCLAVFSGTQSVTPPLYDPNHA
AYMETACLEIPGRKPTDAS
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttccaaagtttgcgtcatggctaacgaagaagtatcctgaaatggtatcggac
gtcattcccgctgatgtgcatggactttatattgatctcaacggcctgattcatccttgt
tgtcacagtgagcgtgacccttccgttgcagcacggccggaggaggaaaaactgcagtgc
atttgctgcgaggtggaggttcttttggcgacagtgcgaccccatgatattttatacatt
gcgacggatggtgttgcgccaagggccaagatgaatcagcagcgcgctcggcgttacatg
agccgagcaaagatcatgagctctggcacagaggttgtggaggaggttgtgagggaattt
accccaaatgagatggcagaggccgatgacgatctggatgacattcgtcagttattgatg
caggatgccttatacggtggggtcatggttcaggacgacacaacagagacattgaatggc
gttgcgaatatcgcagattcactcactcctgtcacgccttgccatgataaaagcaacaac
catgaggcccacgctgaaacctgggctgcttttgacggcctcacggatggcacgatggaa
gttacagagtttgatagcaattgcatcagcccgggaacggcatttatggtgaaggtcacg
aacgcgattcttacgatggtgcaggataaactgaccaacggggatccgctttgggcggga
cttcgtgtggtattctccggggccaacaccccaggcgagggagagcacaagatcgttgat
tttcttcgcacccagtcgtcataccccggctttaacggcaagggggcgcacgtcattgca
ggactagacgcagatctgatctttttgtcgctctcgctgcatatcccacacatacttctt
ctccgagacagggataggaatccgtatgcggtgaggatgcatgaccgacaccgagagaag
agacaggttcagcctcataagttacacacggagagtgaaaagaatacccccgatcttgca
cgggaattggaggataagacggagggcaacgagattcacgtcgatgccgataacgaaaat
agtaaaaactcctccagtgaagggtcagggcaaaggaaaccgccgggtgtgctagaggca
aacaccaattatgagtattatgacattgatacgctaggctcatgtctcgtgtcggaactt
catggcttgtgtcagcttaaaaactttactcccaacaacaagagagcttttagtccggaa
ctgctggtgtcatcgaatggataccacttttatcgccatgcggggtgcgccgatggctcg
ttacgaagcgtttcaaaaggggaggataagagccatcatgacaaggaaagctggcgcaat
tttcttccatgtgcttcacaagcgaacagtaaagttatagatgattttattgtgatggga
atgctgatgggcaatgactttcttccacgtctccctggtgcgttttgcggtgagagtgtc
atggataacttgctggagttgtatgtttccaatgtattgccgtatggatttcttacaagt
gggtatcatgagatttatctgccacagttacagcgtcttctgcggtcatatgcgaagatt
gaaactgtaaaatttcgtcggtttgcgctaagcaacaacaaaatgactcccaaagaggca
gcagagccgctttactcgccgttggacgagcaatggcgacaaacgtacttgacatcaacg
ggacttaccggcaaccttgaagaggcatgtaagaagtatgtggaggggctgcgctttgtg
tggcgttactatagcgggaacgcgtcaacttgcagttggtcctggtattacccatttcat
catgctccatttgcactggacattgctgactacttgcagcgatgcgaccttacgaactta
ccgtccccaccattggagacaacgcctcctgacatgtttttgcaacttctttgtattctc
ccaccgacgagtcacgcgttgttgccagctgttcttggcgacgttatgttgaatccacca
gaggaactacgggagacatttcccagcatgtggcgtgtggactacaccgccgcctacggg
aaggattatcttgcagaggttcttttgccatttgccaacgtgtcagaacttcgtgaactt
gttgagtcatcacggccatatttcacgaaggaggagcaagaacgtgggcggcaggtcaat
taccaccttgtgttgggttcacgggcatctgggtttgaaattaacggtaacatctgtgag
ctcaacgcaaacgatgctgccatatgggatcttcagcgagaggggctgaggtacatgcag
ctgtgggacagcccgccagagcgtggtcggcccaagacatactcctgcacgactttggtc
ccttgggtcacatgcgatgcgagggggcgagtacacaaacgggagcgtttatctcgcagc
gaacggcgcaaacatagggacgatgtgctatccgatgctgctgtgacactgatcaacaag
ggcccttcatttgccgcgtacctctttggttttacggcatctttcttgttgatggccatg
acgcttttcccctggctatcactttctattttgcaggtgctggccgtgaatcttaccgct
gtggcgtttagtttttttataggtattgccgtgcatgaccccattgttgggagcggcgtt
cagcgcaataatattcgctttacatttgttgattggctctgcgccggttgcctttcgttg
aatttttcctgcaatgacaaatgtttttgctgccgtttgccttttgattcaaagcggtgc
ttagccgttttcagtggaacacagtcagtgacgcctcccctgtacgaccccaatcacgca
gcgtacatggagactgcttgccttgaaataccagggcgcaaaccgacggatgcatcttga
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integrated database retrieval system
