Pseudoduganella chitinolytica: PX653_26035
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Entry
PX653_26035 CDS
T08857
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tct
Pseudoduganella chitinolytica
Pathway
tct02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tct00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PX653_26035 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tct03021
]
PX653_26035 (rpoD)
Transcription machinery [BR:
tct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PX653_26035 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GerE
Motif
Other DBs
NCBI-ProteinID:
WEF32816
LinkDB
All DBs
Position
5831940..5834126
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AA seq
728 aa
AA seq
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MTARAAKTADKSETSTPPVVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEFQPEND
EVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATEEELERRRQKLKTLIKF
GKERGFLTYAEINDHLPDNIVDPEAIEGIIGTFNDMGIAVYEHAPDAETLLLSDNVATVT
SDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMI
QAISACPVTIAEIIATSDRIRNDETKIDEIVDGLVDENEDQPAAAAPPATEDDEDDEDEE
EEEEAEEEEASPAGAAAGYSAEQLEAMKNAALAKFDEIANQFDRMRKAYEKEGYNSKSYI
RAQEAISNELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQILDVAVNKCGMPRAHFIKVF
PGNETNLEWVDGEVAANHAYSAILGRNIPTIKELQQRLIDLQARVVLPLPDLRNINRQMA
AGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIK
MEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDAALHASMRGVVKD
VLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDK
LKSFLEGN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcccgagcagccaagacggccgacaagtccgaaaccagcacgccacccgtggtg
agccagacgacggacgcggccgcattggcggccatcgacacgtccggctacgtgctcccg
tccgtcaaggtaccgggacggcgcggtcgcaagccaaaggaattccagccagagaacgac
gaggtcgccgcgctcaacgcggtcgagcgcgccgagctgaaggccgtcgacaaggccaag
gccaaggaccgcaaggccaaggaaaaggcgctgctgaaggacgcgttctcgtcggacacg
gaagcgacggaagaagagctggagcgccgccgccagaaactgaagacgctgatcaagttc
ggcaaggaacgcggcttcctcacgtatgccgagatcaacgaccatctgcccgacaatatc
gtcgatccggaagcgatcgaaggcatcatcggcacgttcaacgacatgggtatcgccgtc
tacgagcacgccccggatgccgagacgctgctgctgtcggacaatgtcgccaccgtcacc
agcgacgacgaggcggaagccgccgccgaggccgcgctgtccaccgtcgactccgacttc
ggccgcaccacggaccccgtgcgcatgtacatgcgcgagatggggtcggtcgagctgctg
acgcgcgaaggcgaaatcgagatcgcaaagcgcatcgaagatggcctgaaggacatgatc
caggcgatttccgcctgcccggtgacgatcgccgagatcatcgccacgtccgaccgcatc
cgtaacgacgagaccaagatcgacgagatcgtggacggcctcgtcgacgaaaacgaagac
cagccggccgcggccgcgccaccggccacggaagacgacgaggacgacgaggacgaggaa
gaagaggaagaagcggaagaggaagaagccagccccgccggtgcggcggccggttactcg
gccgagcagctggaagcgatgaagaacgccgcgctggccaaattcgacgagatcgccaac
cagttcgaccggatgcgcaaggcctacgagaaggaaggctacaactcgaaatcgtacatc
cgcgcgcaggaagccatctcgaacgagctgctgggcatccgcttcacggcaaaagtcgtc
gaaaagctgtgcgacacgctgcgcggccaggtcgatgaggtgcgccacatcgagaagcag
atcctggacgtggcggtgaacaagtgcggcatgccgcgcgcccacttcatcaaggtcttc
ccgggcaacgaaacgaacctggagtgggtggacggcgaagtggccgccaaccacgcctac
agcgcgatcctgggccgcaacatcccgacgatcaaggagctgcagcagcgcctgatcgac
ctgcaggcgcgggtcgtgctgccgctgccggacctgcgcaacatcaaccgccagatggcg
gctggcgagatgaaggcgcgcaaggccaagcgcgaaatgacggaagccaacttgcgtctc
gtgatctcgatcgccaagaaatacacgaaccgcggcctgcagttcctggacctgatccag
gagggaaatatcggcctgatgaaggccgtggacaagttcgagtaccgccgcggctacaag
ttctccacgtacgccacgtggtggatccgccaggccatcacgcgctcgatcgccgaccag
gcccgcacgatccgtatcccggtccacatgatcgagacgatcaacaagatgaaccggatc
agccgccagatcctgcaggaaacaggcgccgagcccgatccagccaccctggcgatcaag
atggagatgccagaggacaagatccgcaagatcatgaagatcgccaaggagccgatctcg
atggaaaccccgatcggcgacgacgacgattcccacctgggcgacttcatcgaggacaac
aatacactggccccatcggacgccgcgctgcacgcctcgatgcgcggagtagtgaaagac
gtgctggactcgctgacgccacgcgaagccaaggtgctgcgcatgcgcttcggcatcgag
atgtccaccgaccacacgctggaagaagtgggcaagcagttcgacgtcacccgcgagcgc
atccgccagatcgaagcgaaagcgctgcgcaagctgcgccacccgtcccgttcagacaag
ctgaagagcttcctggaagggaactga
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