Thermomonospora curvata: Tcur_1207
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Entry
Tcur_1207 CDS
T01127
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tcu
Thermomonospora curvata
Pathway
tcu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tcur_1207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcu03400
]
Tcur_1207
Enzymes [BR:
tcu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tcur_1207
DNA repair and recombination proteins [BR:
tcu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tcur_1207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACY96790
UniProt:
D1A994
LinkDB
All DBs
Position
complement(1363960..1364868)
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AA seq
302 aa
AA seq
DB search
MSGGERVRVRVEDRELRLSNLDKVLYPRHGFTKGELIDYYTRIAPVLLPHLRDRPVTRKR
YPDGMAGQSFFEKNAPPGTPPWVRTVNLPTPGSAKGRASADYVMVDDLPTLVWLANLAAV
ELHVPQWRVGPRGGVHRPDLMVFDLDPGPHTTIVDACRVACALRALLADDGLRAYPKTSG
KKGLHLYVPVRETGRTRQYAEQAAKRLEADAPRHVTARMDRRLRKGKIFIDWSQNDPGKT
TVAPYSMRASGGPAVSTPLAWEEVENCEDPADLVFFSDQALERVQRHGDLMAPLLEEGPP
LP
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggcggcgagcgggtccgcgtccgggtggaggaccgggagctcaggttgtcgaac
ctggacaaggtgctctacccccggcacgggttcaccaagggcgagctgatcgactactac
acccggatcgcgcccgtcctgctgccgcacctgcgggaccggccggtgacccgcaagcgc
taccccgacgggatggccgggcagtccttcttcgaaaagaacgcgcccccgggcaccccg
ccgtgggtgcgcacggtgaacctgccgaccccgggcagcgccaaagggcgggcctcggcc
gactacgtgatggtcgacgacctgcccaccctggtgtggctggccaatctggccgcggtg
gaactgcacgtcccgcaatggcgggtcggcccgcgcggcggggtgcaccgccccgacctg
atggtcttcgacctggaccccggcccgcacaccaccatcgtggacgcctgccgggtggcc
tgcgcgctgcgcgccctgctggccgacgacggcctgcgcgcctaccccaagaccagcggc
aaaaagggcctgcacctgtatgtgccggtgcgggagaccggccggacccggcagtacgcc
gagcaggcggccaagcggctggaggccgacgccccccgccacgtcaccgcccggatggac
cggcggctgcgcaaaggcaagatcttcatcgactggagccagaacgacccgggcaagacc
accgtcgccccttattccatgcgcgcctccggcggcccggcggtgtccacccccctcgcc
tgggaagaggtcgaaaactgcgaagaccccgccgacctggtgttcttctccgaccaggcg
ctggagcgcgtacaacggcacggcgacctgatggcgccgctgctggaggagggaccaccc
ctgccctga
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