Tessaracoccus defluvii: H9L22_05980
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Entry
H9L22_05980 CDS
T06774
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tdf
Tessaracoccus defluvii
Pathway
tdf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9L22_05980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdf03400
]
H9L22_05980
Enzymes [BR:
tdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9L22_05980
DNA repair and recombination proteins [BR:
tdf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9L22_05980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QNP56888
UniProt:
A0A7H0H8M2
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All DBs
Position
1244779..1245720
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AA seq
313 aa
AA seq
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MSERIATEVDGVALSLTNLDKALFPDGFTKSELISYYLEIAEVMLPHLAERAITRVRYPE
GTAKGSFFEKNAPQGSPEWVGTTEVATSAGSVRYVVVDQRATLVWLANLASIELHAPQWR
LPDTTTGDDGIVLDGADEPRATTLVVDLDPGPGITPADSARAAIVAATVLAELGLEAQIK
ASGNKGLQLSVPLEPTPASQVFHFAQSLARHLAATQPKLFTATLARDARAGLVFVDFAQN
LAARNTVCAYSVRGLDRPSVAVPLTWEEVAALRPDSVLRTSPAEALARVQAHGDLWSPLL
PYGRGTRLPDPID
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacgcatcgccacggaggtcgacggggtcgccctgtccctcaccaacctggat
aaggcgctcttccccgacggtttcaccaagtccgagctcatctcctactacctggagatc
gccgaggtcatgctcccccacctcgcggaacgggcgatcacccgggtccgctaccccgag
gggaccgcgaaggggtcgttcttcgagaagaacgcaccccaggggtcacccgagtgggtc
ggcaccacagaggtggccacctcggccggctccgtccgctacgtcgtcgtcgaccagcgt
gcgacgctggtgtggctcgccaacctcgcctccatcgagctgcacgccccgcagtggcgg
ctgccggacaccacgaccggcgacgacggcatcgtcctcgacggcgcggacgagccgcgg
gccacgaccctggtggtcgacctcgaccccggtcccggcatcaccccggcggactcagca
cgggccgccatcgtcgccgccaccgtgctcgccgagctgggtctggaggcgcagatcaag
gcctccggcaacaagggcctgcagctgagcgttcccctggagccgacgcccgcctcgcag
gtcttccacttcgcgcagtcgctggcccgacacctggcggcgacgcagccgaagctgttc
acggcgacgctggcccgggatgcgcgcgcgggcctcgtcttcgtcgacttcgcgcagaac
ctcgccgcccggaacaccgtgtgcgcctactcggtccgggggctggaccgtccgtcggtc
gccgtccccctgacctgggaggaggtggcggcgctccgcccggactccgttctgcggaca
tcgcctgccgaggcgctggccagggtgcaggcgcacggcgatctgtggagccctcttctg
ccttatggccggggtaccaggctccccgatccgatcgactga
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