Torulaspora delbrueckii: TDEL_0C02040
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Entry
TDEL_0C02040 CDS
T02236
Symbol
TDEL0C02040
Name
(RefSeq) hypothetical protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tdl
Torulaspora delbrueckii
Pathway
tdl03030
DNA replication
tdl03410
Base excision repair
tdl03420
Nucleotide excision repair
tdl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TDEL_0C02040 (TDEL0C02040)
03410 Base excision repair
TDEL_0C02040 (TDEL0C02040)
03420 Nucleotide excision repair
TDEL_0C02040 (TDEL0C02040)
03430 Mismatch repair
TDEL_0C02040 (TDEL0C02040)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdl03032
]
TDEL_0C02040 (TDEL0C02040)
03400 DNA repair and recombination proteins [BR:
tdl03400
]
TDEL_0C02040 (TDEL0C02040)
Enzymes [BR:
tdl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TDEL_0C02040 (TDEL0C02040)
6.5.1.6 DNA ligase (ATP or NAD+)
TDEL_0C02040 (TDEL0C02040)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
TDEL_0C02040 (TDEL0C02040)
DNA replication proteins [BR:
tdl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
TDEL_0C02040 (TDEL0C02040)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
TDEL_0C02040 (TDEL0C02040)
DNA repair and recombination proteins [BR:
tdl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
TDEL_0C02040 (TDEL0C02040)
NER (nucleotide excision repair)
Other NER factors
TDEL_0C02040 (TDEL0C02040)
MMR (mismatch excision repair)
Other MMR factors
TDEL_0C02040 (TDEL0C02040)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
11500428
NCBI-ProteinID:
XP_003680304
UniProt:
G8ZRF1
LinkDB
All DBs
Position
3:complement(352579..354696)
Genome browser
AA seq
705 aa
AA seq
DB search
MFRVVGRPLVELLINKGMSSGKKQATLARFFSAVQKDDTKEKVNGDVKIIESRDNQDEPV
TKKFKSSSPVKLQTSSLSPVKSAGVESGDKPVSPDLYYSKVPYSDVCNVFQEIEGTSSRL
SIIKICSEFFSRIMKDNPQNLIPTTYLFINRLGPDYEPGLELGLGEGLLMKTISEACGKS
LVQVKNRYREMGDLGQIALEARNVQPTMFKPKPLTVGEVFENLRAIAHSQGKDSQTRKIK
LIKRMLTACEGVEAKFLIRSLESKLRIGLAEKTVLISLSKALLTNEGETGKEPSMELVEQ
AEAKIRDAFCQVPNYEIVINACLDYGIMELDKHCRLRPGIPLKPMLAKPTKSITEVLDRF
QGQTFTSEYKYDGERAQVHLLEDGTMRIYSRNGENMTERYPEISIRDFVADLEHTKTLIL
DCEAVAWDKVQQKILPFQVLSTRKRKDVEAKDVKVRVCLFAFDIICHNGERQINKSLRER
RELLAQVTKPVAGEFQYAVELTTSSVEELQKFLDQSVKDSCEGLMVKMLDGPESHYEPSK
RSRNWLKLKKDYLDGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDSGEFETCCKIG
TGFSDEMLQQLYERFSKTTLDGPKATYVFDSSAEPDVWFEPTTLFEVLTADLSLSPVYKA
GASTYDKGVSLRFPRFVRLRDDKSVEDATSSAQIVELYQDQSHVA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgagtggttggcagaccattagtggaactattgatcaacaagggaatgtcttcg
ggcaagaaacaggccactttggctcgatttttcagtgcagtgcagaaggatgatacaaag
gagaaagtaaatggtgatgtgaagatcattgagtccagagataatcaggatgagcccgtt
acgaagaagttcaagtcatcttcacctgtcaagttgcagacgtcatctttgtcgcccgtg
aagtcggccggtgttgagtctggagataaaccagtctctcccgatctttattactcaaag
gtaccttactcggacgtttgcaatgtgttccaggagattgagggcacgtcttcgagactc
tcaattattaagatctgctcagaatttttcagtcgcatcatgaaggataacccacagaac
ttgatcccaacgacctacttgttcatcaaccgattgggtcccgattatgagccaggactg
gaactgggactgggagaaggtctgttgatgaagactatcagtgaagcttgtggcaaatcc
ctcgtgcaggttaaaaatcggtatagagagatgggtgacttgggtcaaatcgcgcttgaa
gcaagaaacgttcaacctacgatgtttaagcccaagccgttgactgtgggtgaagtgttc
gaaaatttaagagcaattgcccattcacaagggaaggattcgcagactagaaagattaag
ctgatcaagagaatgctcaccgcgtgtgaaggtgtcgaagccaagtttctgataagatct
ctagagtcgaaattgagaattggtttagccgagaaaacagtattgatctcactctcgaaa
gctttgctgaccaacgagggtgaaactggtaaggagccatcgatggaacttgttgaacag
gcagaggcaaagattagggacgcattttgtcaagtgccaaactatgagattgttatcaac
gcatgtctagattacggaataatggagttggacaagcattgccgattgaggcccggtatt
cccttgaaaccgatgcttgccaagccaactaagtctatcaccgaagtacttgacagattc
cagggccaaacctttacatcagagtacaaatatgatggtgaaagagcgcaagtacatcta
cttgaagatggaacaatgagaatttactcacgtaatggtgaaaacatgactgaaaggtac
cccgaaatcagtatcagagatttcgtcgcagaccttgagcacacaaagacattgattttg
gattgtgaagcagtagcctgggacaaggtacaacaaaagatcctaccattccaagtcctc
agtacaagaaagcgtaaggatgttgaagccaaggatgtcaaagtcagagtgtgtctcttt
gcattcgatatcatatgtcacaatggtgaaagacagatcaacaagtctctaagagagaga
agagaattactagcgcaagtgactaaaccagttgctggcgaatttcaatacgctgttgag
ttgaccacctcttcggtggaagaactacaaaaatttctcgaccaatcagtcaaggactct
tgcgaaggtctcatggtcaagatgctcgacggtccagagtcccactacgaacccagcaaa
cgatctcgtaattggctaaagctaaagaaagactacctcgacggagtaggcgactcactc
gatttgtgtgtcctaggagcctactacggccgtggtaagcgtacaggtacctacggtggg
tttttacttggctgctacaaccaagattccggtgaattcgaaacctgctgtaaaatcggt
acaggtttctccgacgaaatgctccagcaactctacgaaaggttcagcaaaactacgctc
gacggacccaaagctacctacgtcttcgacagcagtgcagaaccagacgtgtggttcgag
cccactactctgttcgaagtgctcacagctgatctctcactatcccccgtctataaggca
ggtgcttccacttacgataaaggagtgtctctacgcttcccgaggttcgttcgtctgaga
gatgacaagtctgtcgaagatgccacttcctctgcccagattgtcgagctgtaccaggat
cagagccatgttgcttaa
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