Triplophysa dalaica: 130408868
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Entry
130408868 CDS
T09616
Name
(RefSeq) collagen alpha-1(XXIV) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tdw
Triplophysa dalaica
Pathway
tdw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tdw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130408868
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdw00536
]
130408868
Glycosaminoglycan binding proteins [BR:
tdw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130408868
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
130408868
NCBI-ProteinID:
XP_056588309
EnsemblRapid:
ENSTDLG00000005297
LinkDB
All DBs
Position
20:complement(19634207..19720065)
Genome browser
AA seq
1619 aa
AA seq
DB search
MHLGAQRTRSGRVSPTDTTRFFVLLLSTCAALLSAEECSSAQGVDVIRHLGLSGHRDTQT
SGTDYLTSLASSPTVLPPGVGVTLGRESLIDSPSPGLFPAGVDKEFSLVVTLRSWRASNA
FLFSVRDKKDRLQFGLQLLAGRVVIHTGEKASVYFKHELQDGQWHSFSVGVRPRSVSFFA
RCGAVQHSEETLTWTQTLGSEGRVSVGKMDPRAVQFEGALCQLDIYPCAQAAAKYCDYVK
KHCRLSDTFRSETSPASPHTSSGSHLSTFTPSPRLTRFSQTLRSHTMRDAGPSPSPLSRF
PIAEKTPEDQRPLMKPRGTEVTPDPVTVVRQRLLRNSVKENVVKVNGTVLYREESSSNVL
DMSEEGMHETGYSDGYGYDYGFDEDEYFLEYDGFIGPKGDPGPPGLPGPPGLSGPSGKRG
PRGPPGPHGNPGLPGLAGLKGAKGDPGLSPGQAPAGDQGERGRPGPQGPKGEQGVKGPKG
YPGPVGLPGEQGVPGQPGVAGAAGYPGRQGLAGPEGNPGPKGVNGFIGSPGVAGPPGPEG
ERGIPGPAGIKGPKGRQGVVGDAGERGPPGPDGNEGPVGGTGSGGFPGLRGDAGPEGPRG
FPGIVGPQGLTGGVGPPGMKGDKGEPGFRGEPGETGYHGDKGTVGNLGPPGPRGKPGPPG
KMGERGLQGPPGPPGPEGFPGDIGAPGPNGPLGPKGIQGLRGPQGPPGPKGTEGDEGPPG
PPGSPGPTGRHGRKGLIGEPGPEGLKGETGDLGNVGKIGPPGPAGLTGTTGVMGQPGEKG
ERGPPGSLGPPGEKGSMGYPGLPGGPGDFGPQGPPGVQGSRGPAGVPGLKGRRGPRGAEG
PLGEPGPEGVKGEKGSPGNKGAPGFIGKAGSPGKRGPPGPPGQAGPSGSSGDKGPPGEPG
SRGPPGDPGPDGEQGHEGPAGPEGEQGPLGEPGVKGEVGPVGGEGEPGQLGIRGLPGPPG
EEGHQGKDGPKGKSGDRGPTGEGGERGEVGISGPPGPPGDAGKKGFTGPEGKLGLAGNRG
RPGKKGEKGSSGHLGETGSSGETGQTGERGLKGARGTRGPAGRPGVMGPQGEQGLEGYTG
HAGKPGPAGPPGPKGEKGYPGEDSKTAGPPGPLGEPGGPGEKGERGEPGDIGYQGHTGVA
GVRGALGQQGSPGSPGLPGQEGPMGEKGIEGLAGKKGSRGPPGAPGLEGPVGFPGLRGTS
GYPGSDGLTGLPGLPGVPGSKGRTGQRGDTGPEGRAGLPGPRGELGLPGVVGERGPAGLK
GERGLPGDRGGAGIRGMEGATGDQGMTGQPGAKGQPGEVGDAGVVGLQGFPGPKGPGGDV
GLAGVHGPKGPSGVPGFSGPVGPSGMIGPLGKPGPRGLKGSRGEMGPRGPQGSPGPQGAP
GLAGPSRRINVNTAFQGLTEFDAFPHLESYQNTDASPLQQNAEIFRTLRYLNGIVTSMKT
PAGTRENPARLCKDLLDCRSKISDGMFWVDPNLGCTSDAIQVFCNFTAGGQTCLHPLTTD
KTTFDVGKVQMKFMQLLSVNATQTISLHCYNHPATIVTEIPPPLHFQGWNGHVFKEHSSP
RPPGLLDTCEVRDGRWHQSRFMFQTQDTYQLPIVSVQGLDHSHPSDRRRQLEIGPVCFL
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcccaacggacaaggagtggacgcgtttctcccacagacacaacgaga
ttcttcgtcctcctcctgtcgacatgtgctgctctgctgtctgcagaagaatgctcaagt
gctcaaggtgtcgatgtgattcgtcatctgggcctctccggtcacagagacactcagacg
tccgggacagattacctcacctctctcgcttcatctccaaccgtcctgcccccaggtgtt
ggggtaaccctcggacgcgagtccctcattgattccccgtcgccgggactcttccccgcg
ggcgtggataaggagttttccctcgtagtcactttacgctcctggcgagcgagtaacgct
tttctgtttagtgtgcgtgataaaaaggacagactgcagttcggcctccagctcctggcc
ggccgggtggtcattcacacgggtgagaaagcctcggtgtacttcaaacacgagctgcag
gacggacagtggcactctttctctgtcggggttcggccgcgctccgtatcattttttgcc
cgctgtggagccgtgcaacacagcgaggagacgttgacctggacgcagacgctgggttct
gaaggccgtgtttctgtggggaagatggacccccgggcggtgcagtttgaaggagccttg
tgccaactggacatctacccctgtgcccaagctgcggcgaaatactgtgactacgtcaag
aaacattgcagactgtccgacacgttccgatccgagacctcaccggcatcccctcacacc
tcttcaggatcacacctgtccacctttacaccctcgcctcgcttgacccgcttttcacag
acgttgcgctcccacacaatgagggacgcgggtccatctccgagtcccctcagcagattc
cccatcgctgagaagaccccagaagatcaacgacctctcatgaagcccagaggaaccgaa
gtcactcctgatccggtcaccgtcgtccggcagagacttctgagaaacagtgtcaaggag
aatgtggtgaaagtgaacggcaccgtcctgtatcgtgaggagagcagttctaatgtgctg
gacatgtctgaggagggcatgcacgagacgggatactctgacggttacggatatgactac
ggcttcgacgaagacgaatacttcctcgagtatgacggattcatcggtcctaaaggagat
ccaggtcctccgggtcttcctggtcccccaggtttatccggaccctctggaaagagagga
ccacggggtcctcctggtcctcatgggaacccgggtctgcctggtttggccggcctcaag
ggagcaaaaggagatccaggactgtccccgggtcaggctcctgcaggagatcagggtgaa
agaggacgtccaggtccacagggtcctaagggtgaacaaggtgtgaagggacccaaaggc
tatccaggaccagtgggtctgcccggagaacagggtgtgccaggacagccgggcgtagct
ggggcggcaggttaccctggcaggcagggtttggccggacctgagggaaacccgggacct
aaaggtgttaatggcttcatcggatctccaggagttgccggaccacccggaccggaggga
gagagaggaattccaggtcctgcggggatcaagggacctaaaggaagacagggtgttgtg
ggtgatgcgggtgagagaggaccgcctggaccggacggaaatgagggacctgttggggga
accggcagcgggggtttcccgggtctcagaggtgacgccgggcctgagggacctcgtgga
tttccaggaattgtgggacctcagggcctgacgggaggggtggggccacctggaatgaaa
ggtgataagggagaacctggattcagaggggaacctggagaaactggttaccatggcgac
aagggaacggttgggaatctcggaccaccaggacctcgtggaaaaccaggcccccctggg
aagatgggggaacggggactacagggacctccgggaccaccgggacctgagggttttcca
ggagacatcggtgcaccgggaccaaacggccccctgggaccaaagggtattcaaggactc
aggggcccccagggaccaccagggccaaaaggaacagagggagatgaaggccccccgggt
ccgcctggaagtcctggtcccactggcagacacggtcggaaaggtttgattggagaacct
ggacctgaaggtctgaagggggaaaccggtgatcttgggaatgttgggaaaattggccct
cctggtccagcagggctgactggaacaacaggagtgatgggacaacctggagaaaaggga
gagcgaggtcctcctggttctttgggtcctccgggagagaaagggtcaatgggctatcca
ggcctaccagggggtcctggggattttggcccacaaggcccaccaggtgttcaagggtca
cgtggacctgcaggtgttcccggactgaaaggacgcagggggccaagaggtgctgaagga
cctctaggtgaaccaggtcctgagggcgtaaagggtgaaaagggatctccaggaaataaa
ggagcgccggggtttatcggtaaagctggaagtccagggaagagaggaccaccaggacca
ccaggtcaagcaggtccgtcgggcagctcaggtgataaaggtcctccaggtgaacctggt
tccagaggtcctccaggagatccaggacccgatggagaacaaggccatgagggacctgca
ggacctgaaggagagcaggggcctttgggtgaacctggggtcaagggtgaagttgggcct
gttggaggagaaggtgaaccgggtcaactgggcatcagaggtcttccgggaccacctgga
gaggagggacaccaggggaaagacggaccgaagggcaagtcaggtgaccgcggaccaacg
ggagaaggtggagaaaggggcgaggtggggatctctggacccccaggacctcctggagac
gctgggaaaaaaggctttacaggacctgaaggaaaactgggtctggctggaaaccgcggc
cgtccgggaaaaaagggtgagaaaggctcatcgggtcaccttggagaaacgggctcatcg
ggtgagacgggacagacgggggagcgaggtctcaaaggtgctcgtgggaccagaggacct
gcaggtcgacctggagttatgggaccacagggagaacagggactggaaggttacacaggt
catgctggcaagcccggtcctgcgggacccccaggaccaaagggagaaaagggttatccc
ggtgaagacagtaagaccgccggacctcctgggcccttaggtgaaccaggaggtcctgga
gagaaaggtgaacgtggggaaccaggagacattggatatcagggtcatacaggggtcgca
ggggtgcgaggagcgctcggtcagcagggatctcctggatctccagggttacctggtcaa
gaaggaccaatgggcgagaaaggaattgaggggctcgctggtaagaaaggatcccgaggt
cctcctggagcgccaggtctggagggtcctgttggttttccgggactgagaggaacgtcg
gggtacccaggctctgacgggctaactggtcttccggggttaccaggtgtccctggatca
aaggggcgtacgggtcagcgtggtgatacgggtccagaggggagggcggggcttcctggt
cctcggggtgagcttggacttcccggtgtcgttggagagagagggcctgcggggttgaag
ggtgagaggggtttacctggtgacagaggtggagcgggcatcagaggcatggagggggcg
acgggtgaccagggcatgacaggacagccaggagccaaaggacagccaggtgaggtgggt
gatgccggcgtggtgggactccagggattcccaggacccaagggtccaggtggagatgtt
ggtctggccggtgttcatggacccaaaggtccttctggtgttcccggtttctcaggtcct
gtaggtccatcaggaatgatcggcccgctcggaaagccaggtcccagaggcctgaaagga
agccggggtgagatgggacctcgggggccacagggcagtccgggaccgcagggagctcca
ggtttagccggtccgtcgagacgcatcaatgtcaacactgcctttcagggtctgacggag
tttgatgctttcccacacctggagagttatcagaacacagacgcgtctcctctccagcag
aacgctgagatcttcagaaccctgcggtatctgaacggcatcgttaccagcatgaaaact
ccagcgggcacacgagaaaaccctgcacgcctctgcaaagacctgctggactgccggagc
aagataagtgacggaatgttctgggtcgatccaaacttaggctgcacatcggatgccatc
caggtgttctgcaacttcacggcaggtggacagacctgcctgcaccctcttactacagac
aagaccacgtttgatgttggaaaagtccagatgaagttcatgcagctgttgagtgtcaac
gccactcagaccatctcccttcactgctacaaccacccggcgactatcgtcacggagata
cctcctcctctacacttccagggctggaacggacacgtgtttaaggaacactcatctccg
agacctcccgggcttctggatacttgtgaggtccgtgatggtagatggcatcagtcccgc
ttcatgtttcagactcaggacacgtaccagcttcccatcgtgagcgtgcaaggtctggat
cactctcatccatcagacaggcggcgacagctggagatcggccccgtatgctttctgtga
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integrated database retrieval system
