Candidatus Tenderia electrophaga: Tel_12775
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Entry
Tel_12775 CDS
T04171
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tee
Candidatus Tenderia electrophaga
Brite
KEGG Orthology (KO) [BR:
tee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tel_12775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tee03400
]
Tel_12775
Enzymes [BR:
tee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tel_12775
DNA repair and recombination proteins [BR:
tee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tel_12775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF3854
Motif
Other DBs
NCBI-ProteinID:
ALP53938
UniProt:
A0A0S2TFP3
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All DBs
Position
2792158..2793075
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AA seq
305 aa
AA seq
DB search
MARFGRYTVELSNTDKVFFPDAGISKGDLIDYYSAVAEWLVPHAKDRPLTLHRFPDGIDQ
DGFYQQQRSDYFPDWIQSRKTARVEDSHEDEKAVDHVLCNNQATLVYLANQGVITLHGWL
SRAPRLTRPDRLIFDLDPAHKDFGTVRRAARQVAALMQQLNLTPYAMTTGSRGLHVVAPL
RRGQQFDAVRDLAQAMAQHLAQQHSDDLTVEQRKDKRQGRIYLDVMRNAYGQTAVLPYAV
RAKPGAPVATPLDLDELDDSGLDPQGWHIKNILRRLGQKGDPWADIRRHAVSIEGVRKAL
DKMRD
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggcacgcttcggtcgctacacggtggaactctccaataccgacaaggtattttttccc
gacgccgggattagcaaaggggatcttatcgactactacagcgcggtggccgagtggttg
gtgccccatgccaaggaccgtcccctgaccctgcaccgctttcccgacggcatcgaccaa
gacggcttttaccagcagcaacgcagcgattattttcccgattggatccaaagccgcaag
acagcgcgggtcgaggacagccacgaggatgaaaaggccgtggaccacgtgctgtgcaac
aatcaggcgaccctggtctatctcgccaaccagggggtgattaccctgcacggctggctg
tcccgggcgccccgcctgacccgtccggatcgcctcatcttcgatctcgatccggcgcac
aaggattttggcaccgtgcgccgcgccgcccggcaggtggcggcgctgatgcagcagcta
aacctgacgccctatgccatgaccaccggctcgcgcggcctgcatgtcgtggcgccgtta
cggcgcgggcagcagttcgacgcggtgcgcgacctggcccaggccatggcccagcacctg
gcgcagcaacacagtgacgacttgacggtggagcagcgcaaggacaaacgccaaggccgc
atctatctggatgtgatgcgcaacgcctatggtcagaccgcagtgctgccctatgcggtg
cgcgccaagcccggcgccccggtggccacgccgctggacctggacgaattggacgacagc
gggctcgatcctcagggctggcatatcaagaacattctgcgacgtttgggtcaaaagggc
gacccgtgggccgacattcgccgtcacgccgtcagcatcgagggggtgcgcaaagcgctg
gacaagatgcgggattga
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