Tenacibaculum todarodis: LPB136_10845
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Entry
LPB136_10845 CDS
T04588
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ten
Tenacibaculum todarodis
Pathway
ten03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPB136_10845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ten03400
]
LPB136_10845
Enzymes [BR:
ten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB136_10845
DNA repair and recombination proteins [BR:
ten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPB136_10845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
APG65830
UniProt:
A0A1L3JL07
LinkDB
All DBs
Position
2373260..2376598
Genome browser
AA seq
1112 aa
AA seq
DB search
MSKQTIVNHYQQSVKKQQILTKLQHEKSHFQISNLVGSSLSFVISETFKQADKPYLLIFN
DKEEAAYYLNDFEQLLGEKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAV
IITYPTALFEKVVTKKELEKNTLKITVGENLSPDFVNEVLFEYKFKRVDFVTEPGEFSVR
GGIIDVFSFSNDEPFRIEFFGDEVDSIRTFDIETQLSKEKLKKASIMPNVENKTLQEKRE
SFLKYISSKTVIFAKNVDIIAGNLDKFFAKAEEAFGTLSEEINHSKPSELFCDGSFIKNQ
LQDFSLVTFGTTKHDSELPKSVNFTVKPQPSFNKQFNLLIEDLNEHHKNGFTNYILCANE
KQAQRFHDIFDDADQEVFYETIVFPLYKGFIDEDAKIVCYTDHQIFERYYKFRLKNGYAK
KQSITLKELNKLEKGDYVTHIDHGIGKFAGLQKIDVQGKKQEAIKLVYGERDILYVSIHS
LHKVSKFNGKDGKAPKIYKLGSGAWKKIKQKTKARVKHIAFNLIQLYAKRKLQKGFSFGA
DTHMQHELEASFIYEDTPDQFSSTQDVKADMEKEQPMDRLVCGDVGFGKTEIAIRAAFKA
VDNGKQVAVLVPTTILAFQHFKTFSERLKEFPVTVDYLNRFRTTKQRNGVLEGVTDGSVD
IVIGTHQLTNKKIKFKDLGLLIIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQF
SLMAARDLSVIKTPPPNRHPIETNVIRFSEETIRDAISYEISRGGQIFFIHNRIENIKEV
AGLIQRLVPSAKIGIGHGQMDGKKLESLMLGFMSNEFDVLVSTTIIESGLDVPNANTIFI
NNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPHHMMTDDAKKRISALELFSDLGSGLNI
AMKDLEIRGAGDLLGGEQSGFINDIGFETYQKILNEAIVELKENEFKELYPEEKNKPKEY
VKEVQIDTDFEILIPDDYVNSVTERLSLYNKLGNLEKEEELQVFETEIVDRFGEIPTQVQ
DLLDSVRIKWLAKELGLEKIILKQKRLVGYYISDQQSDFYQTESFTKMLSYVQRNPKSCV
MKEKQTSKGLRLLITFIRIDSVKTALKILEKV
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaacagacgattgtaaaccactatcaacaatctgttaagaaacagcagatttta
accaagctacaacacgaaaaaagccattttcaaatatcgaatttggtgggttcgtcgttg
tcttttgttatttcagaaacttttaaacaagcagataaaccctatttattaatctttaat
gataaagaagaggctgcttattatttaaacgattttgaacaattattgggcgaaaaaaac
gtgcttttttatccaggttcttaccgaagaccttatcaaattgaagaaacagataatgcc
aatgttttattacgatcagaggttttaaatagaattaattcaagaaaaaaaccagccgta
ataattacctatccaacggcactttttgaaaaagtagttacaaaaaaagaactcgaaaaa
aacacgttaaaaataactgttggagaaaacctttctccagattttgtaaacgaagtattg
tttgaatataaatttaaacgtgtagattttgttacagaaccaggagaattttctgttaga
ggaggaattattgatgtcttttcattttctaatgatgaaccttttagaattgagtttttt
ggagatgaagtagatagcattagaacctttgatatagaaactcagctttctaaagaaaaa
ttgaagaaagccagtataatgcccaatgtagagaataaaacactgcaagaaaaaagggaa
agttttctaaaatatatttcgtctaaaacagtaatttttgctaaaaatgtagatataatt
gcgggaaatttagacaaatttttcgctaaagcggaagaggcttttggaactctttcagaa
gaaataaaccattctaaaccatcagaattattttgtgatggaagtttcataaaaaatcaa
ttacaagattttagtttggtaacttttggaacaacaaaacatgattcagaattaccaaaa
agtgtcaattttactgttaaaccccaaccttcttttaataaacaattcaacttattaatt
gaagatttaaatgagcatcataaaaacggatttacaaactacattttatgtgccaacgaa
aaacaagcacaacgttttcatgatatttttgatgatgcagaccaagaagttttttatgaa
accatagtttttccactctataaaggttttatagatgaagacgcaaaaattgtgtgttat
acagatcatcaaatttttgagcgttattataaattcagactaaaaaacggatatgcaaaa
aagcaatccatcactttaaaagaattaaataagctagaaaaaggcgattatgttacacat
attgaccacggaattggaaaatttgcaggacttcaaaaaatagatgttcaaggaaaaaaa
caagaagctattaagcttgtttatggagaaagagatattttatatgtaagtattcactcg
cttcacaaggtttctaaattcaatggaaaggatggaaaagcgcctaaaatttacaaatta
ggttctggcgcttggaaaaaaatcaaacagaaaaccaaagcgagagttaaacatattgct
tttaatttaattcaattgtatgcaaaaaggaagctgcaaaaaggtttttcttttggtgca
gatacgcacatgcagcatgagttagaagcaagttttatatatgaagatactccagatcag
ttttcatctacacaagatgttaaggcagatatggagaaagaacaacctatggatcgtttg
gtttgtggtgatgttggttttggtaaaacagaaattgcaattagagcagcatttaaagca
gtagacaatggaaaacaagttgctgttttagttccaacaacaattttagcgtttcaacat
tttaaaaccttctcagagcgtttaaaagagtttcctgttactgtagactatctgaatcga
tttagaaccacaaagcaacgaaatggtgttttagaaggtgtaactgacggaagtgtagat
atcgtgataggaacacatcaattaaccaataaaaagataaaatttaaagatttaggacta
ttaattattgacgaagaacagaagtttggagttgccgtaaaagacaagcttaaaaccata
aaagaaaatgttgatacgctaaccttaaccgcaacgccaattccacgaacgttacaattt
agtttaatggcggcaagagatttatcggttataaaaactccgccacccaatcgtcatcca
atagaaacaaacgttattcgttttagcgaagaaacaattcgtgatgctatttcgtatgaa
atttctcgtggaggtcaaatcttttttattcataatagaattgaaaatattaaggaagtt
gctgggttaattcagcgtttggttccgtctgctaaaattggaattggtcatgggcaaatg
gatggaaaaaaactagagagtttaatgctcggttttatgagcaatgagtttgatgttttg
gtttctacaactattattgaaagtggtttagatgttcctaatgcgaatactatttttatc
aataatgccaataattttgggctttcagacttacaccaaatgcgtggtagagttggtcga
tctaacaaaaaagcattctgttattttataacgccgccacatcatatgatgacagatgac
gccaaaaaaagaatctcagccttagagttattttccgatttaggaagcggtttaaatatt
gccatgaaagatttagaaattcgtggagctggagatttattaggtggagaacaaagcgga
tttattaatgatattggttttgaaacctatcaaaaaatattaaatgaagcaattgtagag
ttgaaggaaaatgagtttaaagaactctatcctgaagagaaaaataaaccaaaagaatat
gtgaaagaggtgcaaattgataccgattttgaaattcttattccggatgattatgtaaac
tctgtaacagaaagattaagtttatataacaaattaggaaacttagaaaaagaagaagaa
ttgcaagtttttgaaacagaaatagtggatagatttggagaaataccaacgcaagttcaa
gatttgttagattcagttcgtattaaatggttggcaaaagaattaggattagagaagata
attttaaagcaaaaacgcttggttggttattatatttctgatcaacaaagtgatttttat
caaacagaatcatttacaaaaatgttgagttatgttcaaagaaatcctaaaagttgtgtg
atgaaagagaaacaaacctctaaaggtttacgattattaattacttttatcagaatagat
tccgtaaaaacggctttaaaaattttagaaaaagtttaa
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