Tauraco erythrolophus (red-crested turaco): 104380543
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Entry
104380543 CDS
T08611
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
teo
Tauraco erythrolophus (red-crested turaco)
Pathway
teo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
teo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104380543 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
teo00536
]
104380543 (COL27A1)
Glycosaminoglycan binding proteins [BR:
teo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104380543 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
GH131_N
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
104380543
NCBI-ProteinID:
XP_009986354
LinkDB
All DBs
Position
Unknown
AA seq
1744 aa
AA seq
DB search
MEPESEPVSRLRATAAGRGGFCFLWTVLCFTWFLGFAQGNSEDVDVLQRLGLSGKRPSNG
WSSSRTVPQGVIPFKSGVIFTQRARVEAPVSTILPAGSSTDLLLVLSLCSHRINNAFLFA
VKSKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYNVHDGQWHNMAIDIRGQTVTLFTSCGK
RRVHADLHFKKDEALDPHGSFLFGKMNQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQC
RQADTYRPNLPPLIPLLPRDPGASSSTPQHMEPSLQGLKNLTTAAPSLEFGRVTAPLKTR
GLGATTVALASSLPRLTTKATKVTVAPSPLPSSTETQPPTRSLPRGTVMTLRVSRPTPST
RVEKTPLPTAKKAPPTSQSPATASRKESKQETKKIIDQKPTIEPSEAPRTVKPTRRMTDN
TTSNVHFVTLKQTPQNPSNGPIPKKHMPSPTRKVDPSNVPLVYTKPPLGSARPVSRARAH
AFNLTTPAATDGYQIFDPLGPTLFPFLLGYPGVKGERGPQGPPGLPGLPGPPGKRGSRGP
PGPHGNPGSPGPPGLKGQKGDPGLSPGKARNGQKGDVGLPGLTGFPGPPGRKGYKGYPGP
PGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGEPGPKGSRGYIGLPGLFGLPGADGERGI
PGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIGYPGP
KGLKGLMGNPGEHGLKGDKGDQGGAGVPGDIGFQGDKGSQGLPGVPGARGKAGPLGKVGD
KGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGPPGV
PGPEGRSGRKGFPGRPGPDGPKGEPGNRGRPGKVGEQGLMGFIGPVGEPGIVGEKGDRGS
VGPPGPPGVKGSMGHPGTPGGVGFPGIPGPTGPAGVRGAPGIRGMKGRRGARGPDGPVGE
PGSRGVKGRPGEPGKLGPDGLQGKMGETGETGARGFPGIQGPSGPPGAKGAPGDPGPQGP
QGPPGPLGEIGHKGPPGSMGQPGLAGEPGMKGDPGHLGVPGEQGLIGQRGESGLEGDSGP
PGPDGVKGDKGERGLEGEKGEKGDEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKGKPGQ
KGSKGYQGQLGEMGSPGKEGPKGNQGPKGSRGTLGPMGAPGRMGAQGEPGLKGYQGHAGP
PGPIGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQEGLDGERG
KPGQQGLPGDPGPPGQPGAKGSKGDVGQKGKQGAQGNAGSRGSPGILGLPGPRGVVGRQG
QEGAPGVDGVPGKDGLPGILGEQGDDGEEGVTGMSGKRGNPGIPGLPGAQGPPGFKGERG
LPGQTGQTGKRGSPGGTGLPGSPGDPGPKGQPGDFGEAGFPGIAGLFGPKGPPGDLGFKG
IQGPRGPPGLMGKEGIIGPLGIQGPMGNPGPKGDKGSRGETGLQGPRGPPGPRGHPGPPG
PPGIPASFQQDGFGAAFQTLLDSNIALKTEGYQHPDFLMLDHGGEIFKTLHYLSNLIQSI
KRPLGTKENPARICRDLMNCEQKMNDGTYWIDPNLGCSSDTIQVTCNFTNGGQTCLSPIT
VSKLDFDIGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSEKPSEKAVRFKAWNGQMF
EADGQLRPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHLEVGP
VCFL
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaatcagagccggtctccagactcagagctacagcagcaggcaggggggga
ttctgctttctctggactgtattatgttttacctggttcctgggattcgcacagggaaat
tctgaagatgtggatgttcttcaaagactgggcctgtcagggaaaaggccatcgaacgga
tggtcctcatcacgtacggttcctcaaggggtcatccctttcaaatcaggggtcatcttc
actcagcgagcacgtgttgaagcaccggtcagcaccatccttcccgcaggctccagcact
gacctgctcctagtgctgagcctctgctcccaccgcatcaacaatgcttttctctttgct
gtcaagagcaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaagatcata
gtgtatgtgggccacaagcgctctgtatattttgattacaatgtccatgatggccagtgg
cacaatatggccatcgatatccgtggccagacagtcactttatttacttcttgtgggaag
cgcagagtacatgcggatttgcattttaaaaaggacgaggcattggatccacatggatct
ttcctctttgggaagatgaatcagcactccgtgcagtttgaaggagccatctgccagttt
gatatttatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc
aggcaagcagatacctaccggccgaacctgccccccctcatccccctcctgcccagggat
cctggtgcctcctcgagtaccccacagcatatggagccctcgctgcagggtctgaaaaac
ttgaccactgctgccccatccttggagtttggcagggtcactgcaccccttaagactcgg
ggtttgggtgcaacaactgtcgcattggcgtcatcactgccaagactgacaaccaaagcc
acaaaggtcacagtggccccatctcctcttccgtcgagtactgaaacacagccacccact
cgttcgctccctcgggggacggtgatgaccctcagggtgtctcggcccactcccagcaca
cgggtggagaaaactccccttcctactgccaaaaaggccccgccaacaagccagagccct
gctacagccagtaggaaggagtccaagcaagagaccaaaaagatcatcgaccaaaaaccg
acaattgagccctctgaagcacccaggactgtaaagccaacgaggaggatgactgataac
acaaccagcaatgtccactttgtcaccctaaagcaaacccctcagaacccaagcaatgga
cccattccaaagaagcacatgccgtcccctaccaggaaagtggatcctagtaatgtccct
ctggtgtacaccaaaccacccctggggtctgcccgtcccgtctccagagccagggcacac
gccttcaatctcacaaccccagctgcgactgatggctatcaaatctttgaccccctcgga
cccactctgtttccatttttactgggatatccaggtgtgaaaggagagagaggacctcag
ggtccaccaggtctgccaggcttaccaggaccacctggcaagagaggttccagaggtccc
ccaggtccccacggaaaccctggctcacctggccccccaggcctgaaaggtcagaaaggt
gatcctgggttatcgcctggaaaagctcgcaatggacagaagggagatgtgggcttacct
ggtttgactgggttccctggaccacctggtagaaagggatataaaggctaccctggacca
ccaggtcaccctggagaccagggcgaacgaggaccagacggaagtccaggtgccaaaggt
tatcctggcaggcagggtttacctggccccataggggaacctggtccaaaaggcagtcgg
ggatatattggtctcccaggattatttgggctaccaggggctgatggagaacgagggatc
cctggagttcctgggaagaggggcaagatgggtaggccgggttttcctggtgattttggg
gaacgaggacctccaggcatcgatgggaacccaggagaattgggagccccaggtcctcct
ggagtccttggactcattggtgacatgggctctgttggaccgatcggctatccgggacca
aaaggcttaaaggggctgatgggaaaccctggagaacatggactgaaaggtgataagggt
gatcagggaggagcaggtgttccaggagatatcggcttccaaggagacaagggcagccag
ggtttgcctggagtccctggggcacgagggaaagcaggccccctgggaaaagtcggggac
aaaggtccagttgggtttccgggaccacctggccctgagggcttcccaggtgacattggc
ccaccgggagaaaatggtcctgaaggcctgaagggaaagccaggagcacgaggtttacct
gggccaagaggactgcctggacaagagggagatgaaggacccttaggaccaccaggagtc
cctggtccagagggtcgatctggccggaagggatttccaggaagacctggtcccgatggt
ccaaagggtgagccaggaaaccgtggccgaccagggaaagttggtgagcagggtctaatg
ggtttcattggtcccgtaggggagcctggaatagtgggagaaaagggtgaccgtggctca
gtgggacccccaggccctccaggagtcaaggggtcgatggggcaccccgggacaccagga
ggagtgggttttcctgggatccctggaccaacaggtccggcaggagtccgtggtgcgcca
gggataagagggatgaaaggccgcaggggtgccagagggcctgatggaccagtcggcgag
ccagggtcacgaggtgtcaagggccgaccaggggagccaggcaagctggggccagatggg
ctgcagggaaagatgggtgagactggggagacaggagcacgtggcttcccaggtatccaa
ggaccttctggacctccaggagcaaaaggggctccgggcgacccgggtccacaaggacca
caggggccacctgggcctttgggagagattgggcataagggaccgcctggctcaatggga
caacctggccttgcaggtgaacctggcatgaagggtgatccaggccatttgggagtccct
ggagaacaaggcctcattggccaaagaggagaatcggggctggaaggggacagcgggcca
cccgggccggacggtgtcaagggagacaaaggagagcgaggcctggaaggagagaaagga
gaaaaaggcgatgaaggactgaagggaaaagaagggcctcctggatatcccggcatcaca
ggtgtccgaggaccagaagggaaaccaggaaaacagggggaaaagggcaagcctggccag
aagggcagcaagggctaccaggggcagctcggcgagatgggatctccagggaaggagggg
ccgaaggggaaccaaggccctaaaggatcccgaggtaccctgggacctatgggtgctcca
ggaaggatgggtgctcaaggagaacctggcttaaagggttaccagggacacgcaggacca
ccagggccaatcggaccaccagggccaaagggggaaaagggagaacaaggtgatgatggg
aaggtagaaggaccacagggaccacctggagacagaggccccgttggtgacagaggtgat
cgaggggagcctggagaccctggttatcctggtcaagaagggcttgatggagaaagagga
aaacctggacagcaaggcttacctggggatcctggaccaccaggccagccaggagcaaag
ggatccaaaggtgatgtgggtcaaaaaggaaagcaaggagcccagggcaatgcagggagc
agaggctcaccgggcatccttgggctcccaggtcctcgaggagtggtgggaaggcagggc
caagagggtgcccctggagtggatggagtgcctgggaaggatggcttgcctgggatactg
ggagagcagggtgacgacggggaagaaggtgtgacagggatgtcaggcaaaagagggaac
cctggcataccaggactcccgggagcacagggaccaccaggattcaagggtgaaagagga
ttgcctggacagactggccaaacagggaaacgaggatcaccaggaggaacaggccttcca
gggagccccggtgatccaggacccaaaggacagccgggcgactttggtgaggcaggattt
ccagggattgcgggcctgtttgggccaaagggccccccaggagaccttggtttcaaaggc
attcagggaccacgtgggccacctggtctcatgggaaaagaaggaattattggtccgctt
ggcattcagggtcccatgggaaacccagggcccaagggagacaaaggcagccgcggagag
acgggtcttcaaggtccaaggggtcctccaggcccacgaggacaccctggccctccggga
ccgccaggaattccagcctcatttcaacaagacggctttggggcagctttccagacactc
cttgactcgaacatcgcgctcaagacagagggttaccaacatccagactttctcatgctg
gaccacggaggggagatctttaagactctacactacctcagcaacctcattcagagcatc
aaaagacccctggggaccaaggaaaaccctgcacgcatctgtcgagacctcatgaactgt
gaacagaagatgaacgatggtacctactggattgacccaaaccttggctgttcttcagac
accatacaggtcacctgtaacttcaccaatggtgggcagacgtgtctcagccccatcacc
gtctccaagctggattttgacatcggtagagtccagatgaacttcctccgcctcctcagc
tcagaggtggtgcagcacatcaccatccactgcctgaatacctccgtctggcgggaaggc
tcatccgagaaaccttcggaaaaagccgtgcggttcaaggcctggaacgggcagatgttt
gaggcagatgggcagctcaggccagaagtggcagctgatgattgcaagatcaaggacgga
cgctggcatcggactctcttttcgtttcggacgcaggaccctcagcagctgccgattgtc
aacatctacaaccttcccccatccgagccaggaaagcaataccacctcgaggtcggcccc
gtgtgcttcctttga
DBGET
integrated database retrieval system
