Tessaracoccus sp. T2.5-30: BKM78_00210
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Entry
BKM78_00210 CDS
T04747
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tez
Tessaracoccus sp. T2.5-30
Pathway
tez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BKM78_00210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tez03400
]
BKM78_00210
Enzymes [BR:
tez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BKM78_00210
DNA repair and recombination proteins [BR:
tez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BKM78_00210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AQX14536
UniProt:
A0A807N1A5
LinkDB
All DBs
Position
complement(41695..42636)
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AA seq
313 aa
AA seq
DB search
MSERIATRIDGLTLTLSNLDKPLFPSGFTKGELISYYVGVADAMLPHLRDRAVTRVRCPD
GTAGPSFYEKNVPPGAPDWVDTVDVATSAGTVTYVTAHRTADLVWLANLAAVELHTPQWL
IHDATDSPDGLLLSGEHEPRATTLIVDLDPGPGITPADSARAAIRAATVLAEVGLVAHPK
TSGNKGIQLTVPIQPTPASVVHAFATALAQHLARSHPSMYVATMSKEARANLVFVDYGQN
LAARNTVTAYSVRGLDEPSVATPLTWDEVAALRPDSVLRTSPTQALDRVQRLGDLWAATL
PTAASPSLPSPDF
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacggatcgccacccggatcgacgggttgacgctcaccctgagcaatctcgac
aagcccctcttcccgtccgggttcaccaagggggaactcatctcctactacgtcggcgtc
gccgacgcgatgctcccgcacctccgggaccgcgccgtgacccgggtccgctgccccgac
ggcacggccggcccctccttctacgagaagaacgtgccccccggcgcccccgactgggtc
gacaccgtggacgtggccacgtcggccggcaccgtcacctacgtgactgcccaccgcacg
gccgacctcgtgtggctcgcgaacctcgccgcggtcgagctgcacaccccgcagtggctc
atccacgacgccaccgactctcccgacgggctgctgctctccggcgagcacgagccccgc
gccaccacgttgatcgtggacctggatccgggtccggggatcacgcccgcagactccgcc
agggccgcgatcagagccgcgacggtgctggccgaggtgggcctcgtggcgcatcccaag
acgtcgggcaacaagggcatccagctgaccgtgcccatccagcccacccccgcgagcgtc
gtgcacgcgttcgccaccgccctcgcccagcacctggcccgcagccacccctcgatgtac
gtcgcgacgatgagcaaggaggcccgtgccaacctggtcttcgtcgactacgggcagaac
ctcgcggcgcgcaacacggtgacggcgtattcggtgcgcggcctggatgagccgtcggtg
gcgacgccgctgacctgggacgaggtggccgcgctgcgtcccgattcggtgctgcgcacc
agtcccacgcaggcgctggaccgggtccagcgcctgggagatctgtgggcggcgacgctg
ccgacggccgcctcaccgtcgctgccgtcccccgacttctga
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