Tessaracoccus sp. T2.5-30: BKM78_10350
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Entry
BKM78_10350 CDS
T04747
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tez
Tessaracoccus sp. T2.5-30
Pathway
tez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BKM78_10350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tez03400
]
BKM78_10350
Enzymes [BR:
tez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BKM78_10350
DNA repair and recombination proteins [BR:
tez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BKM78_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AQX16269
UniProt:
A0A807N558
LinkDB
All DBs
Position
complement(2260914..2261900)
Genome browser
AA seq
328 aa
AA seq
DB search
MRPMLATPSRTPGVPPSGPGWVHEVKWDGIRALAETRADGIRLLNRTEGDITVAYPEVAA
GAAGLPDGLVVDGEVVALGPDGTPSFHAIMPRMHVRDAARAARWAAERPVTFVVFDVLRV
GGQDVTARPWTERRALLERLDLDRPAWRRSETFDDGDALARFTREAGLEGVMSKRRDSPY
LPGHRSEAWVKTPHRSELVAVIGGWLPESGNLHALGALWVGQPADEATFDSRPVLYPMGR
VGSGLGRGERDTLLAVLRDTERPTPPFDPAPTDPMARRARWVEPMLCVQVRYLEVTPDGA
LRQPVLRALRPDVSPVDAAAAALLPTAP
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccatgctcgccacgccgtcgcggaccccgggagtcccgccgtcggggccaggc
tgggtgcacgaggtcaagtgggacggcatccgcgccctcgccgagacccgggccgacggc
atccggctcctcaaccggaccgagggcgacatcacggtggcctacccggaggtcgccgcc
ggggcggcggggctgcccgacgggctcgtggtggacggtgaggtggtggccctgggaccc
gacggcacgccgtcgttccacgcgatcatgccgcgcatgcacgtgcgcgacgcggcgcgg
gccgcccgctgggccgccgagcgtcccgtcacgttcgtcgtgttcgacgtgctgcgcgtc
ggcgggcaggacgtgaccgcccggccgtggaccgaacgccgggcgctgttggagcggctc
gacctcgaccggccggcgtggcgccgctccgagaccttcgacgacggcgacgccctcgcc
cgcttcacccgcgaagccggcctggagggcgtgatgagcaagcggcgtgactcgccctac
ctgcccggccaccgcagcgaggcctgggtgaagaccccccaccgctcggagctggtcgcc
gtcatcggcggctggctgcccgagtcggggaacctgcacgcgctcggcgcgctgtgggtg
ggccagcctgccgacgaggcgacgttcgactcgcggccggtgctctacccgatggggcgg
gtcggttccggcctgggccggggcgagcgggacacgctcctggccgtcctgcgcgacacg
gagcggccgacgcccccgttcgatcccgcgcccacggacccgatggcgcgccgggcgcgg
tgggtggagcccatgctgtgcgtgcaggtgcgctacctggaggtcacacccgacggggcg
ctgcggcagccggtgctgcgggcgctgcggccggatgtgtcgccggtcgacgcggccgcg
gcggccctgctgccgacggctccctga
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