Tessaracoccus flavescens: BW733_07195
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Entry
BW733_07195 CDS
T04703
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tfa
Tessaracoccus flavescens
Pathway
tfa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BW733_07195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfa03400
]
BW733_07195
Enzymes [BR:
tfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BW733_07195
DNA repair and recombination proteins [BR:
tfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BW733_07195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AQP50647
UniProt:
A0A1Q2CX50
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All DBs
Position
complement(1474308..1476473)
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AA seq
721 aa
AA seq
DB search
MADLILEVPGPEPRSVKLSSPDKVLWPGDDPITKQGLAEYLLSVADPFLAINGDRPMTLQ
RFPDGIEGEEFFSKRPPRGAPDYLRAVMCTYPSRRRHEQLVFDEPAELAWAAQMGTITFH
PWPVRTANLDNPDEFRIDLDPQPGRDFRDAVTAALELRKVMAENGLTAYAKTSGNRGIHV
YARIRPDHEFQDVRHAVIGIARELERRMPDLVTTSWWKEERGERVFVDFNQANRDRTIAG
AYSPRPLPGAPVSTPLTWDELPDADPREFTVRTVPALLESRPCPWADMDEHVGDIAGALA
LWQADLDRGLGELNFPPDYPKMPGEPPRVPPSKRKADRADEDYMAPKAERDAEWGTAIAP
PYGPMLAKPVKKLPEGDFLFEPKWDGFRSIIWRSGDMVEIGSRNSRPMTRYFPELVEAVI
ANFPDHSVIDGEIIMIDPETGDRLNFDALQQRIHPAASRIKKLSEATPASFVAFDLLALG
QDNFTEKPFRERRGALELALRDARPPIYLTQATHDEDVAMDWFSQFEGAGLDGVIAKPLD
EPYVEDKRVMYKLKHERTADCVVAGYRLYKDETDAIGSLLLGLYTEDGSLNSVGVIGAFP
MARRRELFEELQPLVTDFDGHPWAWAKPEETLPDNRDQSIPRTPTSAAHSRWNAKKDLSF
VPLRPERVVEVRYDHMEGDRFRHTAQFVRWRDDREPGSCTYEQLEEPVSYDLSKVLVAGL
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggccgatctgatcctcgaggtgcccggacccgaaccgcgctccgtgaaactcagcagc
cccgacaaggtcctgtggccaggcgacgacccgatcacgaaacagggcctcgccgaatat
ctgctgtcggtcgccgacccgttcctcgccatcaacggtgaccgccccatgactctgcag
cggttccccgacgggatcgagggcgaggagttcttctccaagcgtccaccgcgcggtgcc
ccggactatctgcgggccgtgatgtgcacctacccgtcgcgcaggcgccacgagcagctc
gtcttcgacgaaccggcggagctggcctgggccgcgcagatgggcaccatcacgttccat
ccctggcccgtgcgcaccgccaacctcgacaacccggacgagttccgcatcgacctcgac
ccgcagcccggacgcgacttccgcgatgccgtcactgccgcgctcgagctccggaaggtg
atggccgagaacgggttgaccgcctacgcgaagacctccggcaaccgtgggatccacgtc
tacgcgaggatccggcccgaccacgagttccaggacgtgcggcacgcggtgatcggcatc
gcccgcgaactggagcgccggatgccggacctcgtcaccacgtcgtggtggaaggaggaa
cgcggcgagcgcgtcttcgtcgacttcaaccaggcgaaccgcgaccggacgatcgccggc
gcctactcgccccgcccgctcccaggggcacccgtgtcgaccccgctcacctgggacgaa
ctgcccgacgcggacccgcgcgagttcaccgtccgcacggtgcccgccctcctggagagc
cgaccctgcccctgggcggacatggacgagcatgtgggcgacatcgcgggcgcgctcgcg
ctgtggcaggccgatctcgaccgaggcctcggcgaactgaacttcccgcccgactacccc
aagatgccgggagagccgccgcgcgtgccaccgagcaagcgcaaggccgatcgggccgac
gaggactacatggctcccaaggccgagcgcgacgcggagtggggcaccgccatcgcgccg
ccgtacggtccgatgctggccaagccggtcaagaagctgcctgagggcgacttcttgttt
gagccgaaatgggacggcttccgctccatcatctggcgctccggtgacatggtggagatc
gggtcgcgcaactcgcgcccgatgaccaggtacttccccgagctggtcgaggccgtgatc
gcgaacttccccgaccacagcgtcatcgacggcgagatcatcatgatcgaccccgagacg
ggcgaccggctcaacttcgacgcgctgcagcaacggatccaccccgccgcgtcccggatc
aagaagctcagcgaggcgacgccggccagcttcgtcgccttcgacctgctcgcgctcggg
caggacaacttcactgagaagcccttccgcgaacgacgcggtgcgctcgaactcgccctg
cgcgacgccaggccgccgatctacctcacacaggccacccacgacgaggacgtcgcgatg
gactggttcagccagttcgagggggcgggactcgacggcgtcatcgccaagccgctcgac
gagccgtacgttgaggacaagcgcgtgatgtacaagctcaagcacgaacgcacggccgac
tgcgtcgtggccggctaccggctgtacaaggacgagacggacgccatcggttcgctcctg
ctcggcctctacaccgaggacggctcgctcaactccgtcggtgtcatcggcgccttcccg
atggcgaggcgtcgggagctcttcgaggaactgcagccgctcgtcaccgacttcgacgga
catccgtgggcttgggcgaaacccgaggagacgctgcccgacaaccgcgaccagtcgatc
ccgcgtaccccgacgtcggcggcgcactcccgctggaacgcgaagaaggacctctccttc
gttcccctccgcccggagcgtgtcgtcgaggtgcgctacgaccacatggagggcgaccgg
ttccgtcacacggcccagttcgtgcgttggcgcgacgaccgcgagcccggttcctgcacc
tacgaacagttggaggaaccggtcagctacgacctctcgaaggtcctggtcgcgggtctc
gactga
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