KEGG   Tessaracoccus flavescens: BW733_07195
Entry
BW733_07195       CDS       T04703                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tfa  Tessaracoccus flavescens
Pathway
tfa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BW733_07195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tfa03400]
    BW733_07195
Enzymes [BR:tfa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BW733_07195
DNA repair and recombination proteins [BR:tfa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BW733_07195
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: AQP50647
UniProt: A0A1Q2CX50
LinkDB
Position
complement(1474308..1476473)
AA seq 721 aa
MADLILEVPGPEPRSVKLSSPDKVLWPGDDPITKQGLAEYLLSVADPFLAINGDRPMTLQ
RFPDGIEGEEFFSKRPPRGAPDYLRAVMCTYPSRRRHEQLVFDEPAELAWAAQMGTITFH
PWPVRTANLDNPDEFRIDLDPQPGRDFRDAVTAALELRKVMAENGLTAYAKTSGNRGIHV
YARIRPDHEFQDVRHAVIGIARELERRMPDLVTTSWWKEERGERVFVDFNQANRDRTIAG
AYSPRPLPGAPVSTPLTWDELPDADPREFTVRTVPALLESRPCPWADMDEHVGDIAGALA
LWQADLDRGLGELNFPPDYPKMPGEPPRVPPSKRKADRADEDYMAPKAERDAEWGTAIAP
PYGPMLAKPVKKLPEGDFLFEPKWDGFRSIIWRSGDMVEIGSRNSRPMTRYFPELVEAVI
ANFPDHSVIDGEIIMIDPETGDRLNFDALQQRIHPAASRIKKLSEATPASFVAFDLLALG
QDNFTEKPFRERRGALELALRDARPPIYLTQATHDEDVAMDWFSQFEGAGLDGVIAKPLD
EPYVEDKRVMYKLKHERTADCVVAGYRLYKDETDAIGSLLLGLYTEDGSLNSVGVIGAFP
MARRRELFEELQPLVTDFDGHPWAWAKPEETLPDNRDQSIPRTPTSAAHSRWNAKKDLSF
VPLRPERVVEVRYDHMEGDRFRHTAQFVRWRDDREPGSCTYEQLEEPVSYDLSKVLVAGL
D
NT seq 2166 nt   +upstreamnt  +downstreamnt
atggccgatctgatcctcgaggtgcccggacccgaaccgcgctccgtgaaactcagcagc
cccgacaaggtcctgtggccaggcgacgacccgatcacgaaacagggcctcgccgaatat
ctgctgtcggtcgccgacccgttcctcgccatcaacggtgaccgccccatgactctgcag
cggttccccgacgggatcgagggcgaggagttcttctccaagcgtccaccgcgcggtgcc
ccggactatctgcgggccgtgatgtgcacctacccgtcgcgcaggcgccacgagcagctc
gtcttcgacgaaccggcggagctggcctgggccgcgcagatgggcaccatcacgttccat
ccctggcccgtgcgcaccgccaacctcgacaacccggacgagttccgcatcgacctcgac
ccgcagcccggacgcgacttccgcgatgccgtcactgccgcgctcgagctccggaaggtg
atggccgagaacgggttgaccgcctacgcgaagacctccggcaaccgtgggatccacgtc
tacgcgaggatccggcccgaccacgagttccaggacgtgcggcacgcggtgatcggcatc
gcccgcgaactggagcgccggatgccggacctcgtcaccacgtcgtggtggaaggaggaa
cgcggcgagcgcgtcttcgtcgacttcaaccaggcgaaccgcgaccggacgatcgccggc
gcctactcgccccgcccgctcccaggggcacccgtgtcgaccccgctcacctgggacgaa
ctgcccgacgcggacccgcgcgagttcaccgtccgcacggtgcccgccctcctggagagc
cgaccctgcccctgggcggacatggacgagcatgtgggcgacatcgcgggcgcgctcgcg
ctgtggcaggccgatctcgaccgaggcctcggcgaactgaacttcccgcccgactacccc
aagatgccgggagagccgccgcgcgtgccaccgagcaagcgcaaggccgatcgggccgac
gaggactacatggctcccaaggccgagcgcgacgcggagtggggcaccgccatcgcgccg
ccgtacggtccgatgctggccaagccggtcaagaagctgcctgagggcgacttcttgttt
gagccgaaatgggacggcttccgctccatcatctggcgctccggtgacatggtggagatc
gggtcgcgcaactcgcgcccgatgaccaggtacttccccgagctggtcgaggccgtgatc
gcgaacttccccgaccacagcgtcatcgacggcgagatcatcatgatcgaccccgagacg
ggcgaccggctcaacttcgacgcgctgcagcaacggatccaccccgccgcgtcccggatc
aagaagctcagcgaggcgacgccggccagcttcgtcgccttcgacctgctcgcgctcggg
caggacaacttcactgagaagcccttccgcgaacgacgcggtgcgctcgaactcgccctg
cgcgacgccaggccgccgatctacctcacacaggccacccacgacgaggacgtcgcgatg
gactggttcagccagttcgagggggcgggactcgacggcgtcatcgccaagccgctcgac
gagccgtacgttgaggacaagcgcgtgatgtacaagctcaagcacgaacgcacggccgac
tgcgtcgtggccggctaccggctgtacaaggacgagacggacgccatcggttcgctcctg
ctcggcctctacaccgaggacggctcgctcaactccgtcggtgtcatcggcgccttcccg
atggcgaggcgtcgggagctcttcgaggaactgcagccgctcgtcaccgacttcgacgga
catccgtgggcttgggcgaaacccgaggagacgctgcccgacaaccgcgaccagtcgatc
ccgcgtaccccgacgtcggcggcgcactcccgctggaacgcgaagaaggacctctccttc
gttcccctccgcccggagcgtgtcgtcgaggtgcgctacgaccacatggagggcgaccgg
ttccgtcacacggcccagttcgtgcgttggcgcgacgaccgcgagcccggttcctgcacc
tacgaacagttggaggaaccggtcagctacgacctctcgaaggtcctggtcgcgggtctc
gactga

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