Tachysurus fulvidraco (yellow catfish): 113660734
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Entry
113660734 CDS
T08119
Name
(RefSeq) collagen alpha-1(XIX) chain isoform X1
KO
K24340
collagen type XIX alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113660734
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113660734
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113660734
NCBI-ProteinID:
XP_047672326
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Position
7:complement(19535143..19653448)
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AA seq
1141 aa
AA seq
DB search
MSHWLKWIFFWIVNGIPLTFGMAVNDKIGHLCPPLKLEKRWYAHMNEGHEFTGFDLAENF
VLRKGTSTDDRPFFRLGSKPLVKATELVFPNGLSHEYSLVTTFRLRKTTKKDRWFLWNLL
DQAGESQVSLIVDGAKKVVEFSAIGFLKTKLQYIFKNRDLHVLFDRQWHKFGVSVRRSSV
AVYIDCKLIETRLTAVRDAVDLDGRTLITTRVEDGRPVDIELQEILIFCDPSVSEEANCC
DIPGASCGVRETHAPTASPLLTGYHHQTQQLTVQRSTPTQKPADQCQCWAEKGESGHQGV
AGSPGAKGDKGDKGDSGINGYPGIPGEKGDMGIAGMPGLDGNTGNKGEPGSAGEQGIDGE
KGLKGDPGPEGRPGQKGDKGDVGPPGPTRISNINECQKGDQGPPGVAGEKGEAGVSGPPG
APGKEGKRGRRGHSGVPGIPGPPGPPGSSEGIGIKGVKGDPGVMGEIGQKGEKGDAGQSG
QEGAHGVKGQKGEVGPRGPPGPVMTAHGLRHLSVPSDAGEKGEKGEKGDPGEKGIPGLPG
IKGSDGLPGQMGKSGPQGKEGLPGPAGLRGLPGDKGLVGEPGPAGRDGEKGQKGDTGGIQ
GQPGPPGPKGEPGVGAHGYTVEVLPGPRGSRGPKGERGMPGIPGEPGEKGEPGVGVLGPP
GMMGSKGEPGVEGPRGPPGLQGLPGVPGIQGPPGHEGKPGPPGEPAALPIVGDIASHLKN
ACSLCQTRIPGLPGQKGEKGAPGASGGDGIQGVKGDQGLRGIVGNPGKEGPKGVKGERGF
PGLAGDKGDEGPPGVPGIKGETGQIGPQGPIGRPGISGTAGLKGEQGIKGPPGRPGPPGP
PGIPYVDGNGMSSLYKLQNGENSGPPGPPGPKGDKGEVGEPGPMGLPGFEGLHGSKGDPG
MPGPPGVAGPIGKSGTRGEPGIAGEPGLRGPVGETGFPGPEGPPGVSGRPGKDGIPGYEG
PAGRPGDRGAKGERGDPGIPGERGVQGERGRPGERGPYGPPGIPGEKGHPGSPGIGSLLN
DYNAMKEIKMFIQNEVLRVFEEKLSRYTMLEKVPAAILAAHGYQGPPGPPGNDGSPGPPG
EPGPPGTQGYRGQKGERGQVGLGAPGPIGKPGPPGIGLPGPPGRCEPNDCMHALPHTNQD
I
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgagtcactggctaaaatggattttcttctggatagtaaatggcattcctttaactttt
ggcatggcagtaaatgataaaataggtcatttgtgccctccattaaaactggagaaaaga
tggtatgcccacatgaatgaaggtcatgagtttacaggatttgatttagcagaaaacttt
gttcttcggaagggaacaagtacagatgacagacctttcttcagactaggcagcaagccc
ctggttaaagccacagagttggtgtttccgaatgggctgtctcatgaatactccctggta
actacattcagactcaggaaaactacaaagaaggatcgatggtttctttggaatctctta
gaccaggctggagaatcacaagtatcattaatagtggatggggctaaaaaggtggttgag
ttttcagccataggctttctgaaaaccaaactccagtatatattcaaaaaccgggatttg
catgttctctttgaccgccagtggcataagtttggggtgtcagtacgacgcagcagcgtt
gcagtctacattgactgtaagctgattgagacacgtctgactgcagttagagatgcagta
gacttggatggacgtacgctaattactactagggtggaggatggacgacccgtggacatt
gagcttcaggagattctaatcttttgtgatccaagtgtgtcagaagaggccaactgctgt
gatatacccggagcaagttgtggtgttagagaaacccatgctcctacagcttccccattg
ctcacgggttaccaccaccaaacccaacagctgacagtgcaacggtccacaccaacccaa
aagcctgctgatcaatgccagtgctgggcagagaagggagagtctggtcatcaaggtgtg
gctggatctcctggagcaaaaggagataaaggagataagggggattcaggaattaatggg
tatcctggtattcctggggaaaagggtgacatgggcattgctggcatgcccggcttagat
ggtaatacgggaaataagggtgagcctgggtcagctggagagcaagggattgatggtgaa
aagggtttaaaaggagacccaggacctgagggccgacctggacagaaaggtgataaagga
gatgtgggtcccccaggtccaacaaggatttctaatataaatgaatgtcaaaaaggagac
cagggtcccccgggtgttgctggtgaaaagggagaagctggagtatctggtccgccagga
gcaccaggaaaagagggcaaaaggggtcgcagaggacattcaggggtgcctggtattcca
ggaccaccgggaccacctggatcatctgaaggtataggcatcaagggggtgaaaggagat
ccaggtgtgatgggagagataggacagaagggggagaaaggagatgccggtcagtctggt
caagaaggtgcccatggtgttaaaggacaaaagggtgaagttggccccagaggaccacca
ggcccagtgatgacagcgcatggtctcagacacctctctgtaccaagtgatgcaggggag
aagggtgagaaaggggaaaagggagacccgggtgaaaaaggcattccaggactaccaggt
atcaagggaagtgatggattgccagggcaaatgggaaagtcaggtccacagggcaaagaa
ggattaccaggccctgctggacttcgaggtcttccaggagataagggattagtaggggag
ccaggaccagcagggagagatggagagaaaggacagaagggtgatactggtggcatccaa
gggcaacctggcccaccaggtcccaagggtgagcctggagttggagcacatggttatact
gtagaggtattacccgggccaagaggatcaagagggccaaagggagagagaggaatgcca
gggataccaggagaaccaggagaaaaaggagaacctggtgtgggagttcttggtccacct
gggatgatgggatcaaaaggggagcctggagtagagggtcctcgtggccctcctggtttg
caaggtcttccgggagtgccaggaatccagggacctccaggtcatgaaggcaaaccaggg
cctcctggtgaaccagcagcattgccgatcgttggagatattgcctcacatctgaagaat
gcctgcagtttgtgccagaccagaataccaggattacctggacagaaaggggagaaggga
gcacctggagcttctggtggagatggcattcaaggggtcaaaggtgatcagggtctgaga
ggtatagttggtaacccaggaaaagagggtcctaagggtgtgaagggagaaagggggttt
cctggcctagccggagacaaaggagatgagggtcctccgggtgtgccaggaatcaagggg
gaaacaggtcaaattggccctcaaggtcccattggtagaccaggaatttcaggcacagct
ggactcaagggagaacagggcataaagggtccaccaggcaggcctggacctcccggacct
cctggcatcccctatgttgatgggaatggaatgagcagtctatataagcttcagaatgga
gaaaactcaggaccaccaggacctccggggcccaaaggagataaaggggaagtaggtgaa
ccaggtccaatgggattgccaggctttgaaggactgcatggctctaaaggagaccctggc
atgcctggtccaccaggagtcgcaggccctattgggaaatctggtactcgtggtgagcca
ggaattgcaggagaacctggactgcgagggcctgtgggagagacaggtttccctggacct
gaaggccctccaggtgtatctggtagacctggaaaagatggaattcccggctatgaggga
ccagctggcagacctggtgatagaggtgccaaaggagagaggggtgatcctgggatccct
ggagagagaggtgttcagggcgagaggggaaggcctggagaaagagggccttatggcccc
ccaggcattcctggtgagaaaggacatcctggttcacctggtataggttcactgctgaat
gattacaacgccatgaaggaaattaaaatgttcatccaaaatgaagtattgcgtgtgttt
gaagaaaagttatcgagatacaccatgctggaaaaggtaccagcagcaatattggctgct
catggctatcaaggtccgccaggcccacctggaaatgatgggtcccctggtccccctgga
gaaccaggacccccaggcactcaaggctatcggggacagaaaggagagaggggtcaagta
ggcctaggtgcaccaggccctataggcaaaccaggtccacctggaattggactcccaggg
cctccgggaagatgtgagccaaatgactgcatgcatgctttgcctcacaccaaccaggat
atctag
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