Takifugu flavidus (sansaifugu): 130518088
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Entry
130518088 CDS
T09160
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
tfs
Takifugu flavidus (sansaifugu)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
130518088
NCBI-ProteinID:
XP_056876413
LinkDB
All DBs
Position
21:3646705..3689360
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AA seq
1588 aa
AA seq
DB search
MWRLCSALALLALCFRPCDSQTSEHVEQCPSLQVEDWRFPQPAGRNITGFNLLRRFSLLK
SADVKKIRNPRGPVILRLGKTALLRPTDQVFPHGLPEEFTLVFTLALKKAALGDTVYLLQ
ISDQQGYPQLSVDFSGPDGTLSLRAGPAVPGADPAGCLFSGEAVEALMDMRWHKVALSVQ
RDSASLLVDCNPVETKPLEPRGVTPTDGHTLLGIRASDARSAQMDIQQVVLYCDPTLGAQ
ETCCEIPGAKCPPDAPKSRRAAENDLLENTFHQEVFTSKDLAEKVLNLARDSGLKGEKGD
VGDSCSGSPSGPCTQGPKGEKGERGEPGLPTNWGEAVASKGEKGQKGELGMQGLTGTPGK
DGRAGSICVVGPKGQKGVPGVVGPEGLAGEPGKPGFPGPPGAGMPGLPGLPGKPGADGEK
GDAGPAGRDGSSGDPGPRGPSGFKGEKGEPCEVCPVLPADLGNTVVLPGKRGPKGEPGSP
GNGERGLPGPQGADGRAGQKGDSGSPGTKGEKGESCSACPTANLLPGVTTQTLKGEKGEA
GIGQKGEQGEHGLRGEKGNAGGTGAEGKPGKPGPRGHVGKDGQRGAKAKPGTPGVGVPGL
KGAKGECGLCQPAEVGSGPANFKMPEGSRGDQGEPGPPGPPGPPGLGADGKQGPPGLPGA
SGEKGDQGDHGEQGMAGVPGTPGLPGEPGRDGFMGLKGEKGDACTSCSSLNMAVGDGVAV
PGPKGERGDPGPSGEGKPGRNGKPGLPGPQGPQGPKGSKGEAGVAGFGLPGPQGEEGPRG
LPGLVGPSGARGLTGPAGPAGEKGSRGDVGPAGPRGPIGNGETGPAGRDGAPGSQGLPGA
DGRPGFDGAKGDKGEPGECNCILPVHTGVGGPGAPGTPVNTWQPGPQGPPGPPGPPGPPG
PRGITGTQGPQGIPGNDGLPGTPAPINPSGLQQLLQDSAEGDGDGGCGEGCSHGLPGVPG
MAGAKGESGDTGKPGVTPLDSCDMCLEKLQATQPAECQTCTGSPGVPGSHGAPGQQGEPG
TPGERGHAGIPGNIGPPGFPGPQGPPGTPGQQGERGSPGLPGMKGEQGPSGTSGYPGSMG
PPGMPGLKGERGSPGNSGQKGESGAAGSAGYPGQPGPPGIKGDTGPAGPTGAKGDQGFPG
PPGFPGPLGQPGVSGKTGRDGPPGLKGEKGNDGAQGSQGPTGARGSPGSPGLMGPPGIEG
LDGKDGKPGLRGEPGPAGPIGPRGIPGFKGKPGHAGFPGQKGEAGPSGPPGKQGRTGHDG
DPGVPGSIGRPGSPGHIGSTGPAGPPGPAGPPGMGIKGDKGQTGERGLPGMSGAPGPPGH
PGTIGEPGSDGAAGKDGVAGLPGDRGSPGQKGEPGEPGQKGSPGERGRPGPPGGGGYHSK
DAQPMIGPSGPRGERGSPGAEGIPGSPGLPGPPGNDAVVNYDEIKNFIRQQVIKVFDERM
AYYMSRVQTPVEMVASPGRPGPPGKDGSPGSPGLPGTAGRPGHIGRQGLPGNQGMPGPQG
PKGDKGDKGIGEMGDIGPPGAPGVPGAPGYGKMGPPGPVGQQGVPGLPGSPGHPGSKGRD
GRCNPGDCVSHQVDYSPKGPSVKGPWGV
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtctctgctcggctctcgctctgttggccctctgcttcagaccatgtgactca
cagacatcagagcacgttgaacagtgcccctctttacaggtggaggactggaggtttcct
caaccagccggccgcaacatcaccggctttaacctgctgaggcgattctcgctgctcaag
agtgcagatgtcaagaagatccgtaaccctcgaggacctgttatcctccgccttggcaag
accgcactcctacggcctaccgatcaggtgttccctcacggcctaccagaggagttcacc
ctggtcttcaccctggcgctgaagaaggctgccctgggcgacaccgtctacctcctgcag
atatctgatcagcagggctacccacagctgtctgtggacttcagcggccccgatggcacc
ttgtccctacgtgccgggcccgccgtcccaggagccgaccccgcgggttgccttttctcc
ggagaggctgtggaagctctgatggacatgcgctggcacaaggtggccctcagcgtacag
cgcgactccgcctcccttctcgtggactgcaaccctgtcgagaccaaacctctggagccc
cgcggagtgacccccactgacggacacacgcttttgggcatccgggcatcagatgcccgg
tctgcacagatggacattcagcaggtggttctgtactgcgacccgacgctcggcgctcag
gagacgtgctgtgagatacctggagcaaagtgcccaccggatgctcccaagagccgccgt
gctgccgaaaatgacctattggaaaacactttccaccaggaggttttcacatccaaggat
ctggcagagaaagtactaaatctcgctcgggactccgggttgaagggagagaaaggcgac
gtgggtgacagctgctccggctccccctccggtccttgcacacaaggacccaagggcgag
aagggagagagaggtgagccgggcctgccaaccaactggggcgaagcagtcgcgtccaag
ggagagaaggggcagaaaggagaactgggcatgcaggggctcacgggcactccaggaaag
gatggtcgagccgggtccatctgcgtggtcggccccaagggacagaagggcgtcccgggt
gtggtgggtcctgaagggttggctggtgaaccagggaagcctggtttcccaggaccacct
ggtgctggaatgccaggcttaccgggccttccaggtaaaccgggtgcagatggagaaaag
ggagatgctggaccagcaggacgcgatggctcctctggagatccaggtccgagaggacca
tcggggtttaaaggagaaaagggggagccgtgcgaggtgtgccccgtattgcccgccgac
ctgggcaacacggtggttctcccagggaaacgcggcccgaaaggcgagcctggatcccct
gggaatggcgagaggggcctgcccgggcctcaaggtgcagatggcagagcgggacagaag
ggagattcaggatctcctggcaccaaaggagaaaagggagagtcttgttcagcctgtccc
accgctaacctgctcccaggggtgacgacccaaactctgaagggtgagaaaggagaggct
gggattggacagaaaggcgagcaaggggaacacggtcttcgaggggaaaagggaaacgca
ggcggcaccggagccgagggtaagccgggaaaacctggaccgaggggccacgtcggcaag
gatggacagagaggtgccaaggcaaagccagggacgcccggcgtgggcgttccaggcctg
aagggtgcgaagggcgagtgcggtctgtgccagccggccgaggtcgggagcggaccggcc
aacttcaaaatgccagaaggatcaagaggcgatcaaggcgagccgggccctcctggtcct
cctggacctccaggacttggagctgatggcaaacagggcccaccggggcttcctggtgca
agtggagaaaagggtgaccaaggtgatcatggtgaacaaggaatggctggtgtccccgga
accccaggactgcctggagagcctggtcgagatggattcatgggcttgaagggagagaag
ggtgatgcctgtactagctgttcctctctgaacatggctgtgggtgatggcgtagctgtg
ccaggacccaaaggggagagaggagaccccggtccttcaggggaaggaaaaccaggcaga
aatggcaaacctggtctgccggggccgcaaggtccacaaggccccaaagggagcaagggg
gaagccggggttgcaggatttggccttcctggaccccaaggtgaagagggacccagaggc
ctaccgggacttgttgggccctcaggtgccaggggactaaccggacctgctgggcctgca
ggagagaagggctccagaggcgacgttgggcccgcaggaccacgggggcccataggcaac
ggagaaacaggccccgcaggcagagacggagccccgggctctcaaggcttgccaggagct
gacggtagacccgggtttgatggagctaaaggggacaagggggaacctggagagtgcaac
tgcatattgccggtgcacacgggcgtaggcggacctggagctccgggaactcctgtaaac
acgtggcagcccggccctcagggcccaccaggacctcctggcccacctggcccgcctggg
cctcgtggaatcaccggaacccagggacctcagggtatccctggaaacgacggtttaccg
ggaactcctgcaccgatcaaccccagtggactccagcagctactccaagactctgctgaa
ggggatggtgatgggggctgtggtgagggctgttcccatgggttgccgggggtgccaggc
atggctggtgccaagggagagagtggagacacgggcaagcccggggtaacccccctggac
agctgtgatatgtgtttggagaaactgcaggcaacacagccagcggagtgtcaaacctgc
acaggatcacctggagtgcccggatcgcatggagctcctggacagcaaggggaaccgggt
acgcccggggagagaggccatgctggaataccaggaaatatcggacctccaggttttcca
ggtcctcaaggcccccctggcacacctggccagcagggtgagcgagggtcacctggcctc
cccgggatgaagggtgagcagggcccttcagggaccagcgggtatccaggaagcatggga
ccacctggaatgcctggtctgaagggggaacgtgggagtccagggaacagtgggcagaaa
ggagaatcgggtgctgctggaagtgctgggtacccaggacagcctggaccaccgggtatt
aaaggtgacacaggaccagcaggacccactggtgccaaaggggatcagggttttccagga
ccgccaggattcccaggaccacttggtcagcccggtgtttcagggaagactggaagagat
ggtcctccaggcctcaaaggtgaaaaaggcaacgacggcgctcaaggctctcagggacca
acaggagcacggggctcaccggggtcaccaggactgatgggtccgcccggtatcgagggc
ttggatgggaaggacgggaaaccggggttgcggggagagccgggcccagcaggcccgatc
ggaccccgtggaattccaggattcaaagggaaacccggccatgctggctttcctggacag
aagggtgaagctggcccctctggtcctcctggaaaacaaggcaggacagggcacgatggt
gacccaggagtcccgggatctatcggacgaccgggatccccaggccacattggttctaca
ggtccggccggaccaccgggacctgctggtccacctggaatgggtattaaaggagataag
ggccagactggtgagaggggtcttccaggcatgtcaggagccccaggacctccagggcac
ccaggaacaataggagaaccaggcagtgacggtgcagctgggaaagatggtgtggcaggc
ctcccaggggaccggggctcgccaggtcaaaaaggtgaacctggggaaccaggccagaag
ggctctcctggagagagaggtcgaccgggtccccctggtggtggagggtaccactccaaa
gatgcacaaccaatgattggcccatctggaccacgaggagagaggggaagccctggagca
gagggtattccagggtccccgggacttccagggccgccaggaaatgatgctgtggtgaat
tatgatgaaatcaagaacttcatccgccagcaggtcattaaagtttttgatgagaggatg
gcctactacatgtctcgcgtacagacgccagtggagatggtagcgtctccaggtcgtccc
ggacctccaggaaaagacggatcaccaggttctcccgggctccctggtacagctggacgg
ccgggacatattgggagacaaggccttcctggaaaccaaggaatgccaggaccccaggga
ccaaagggagataaaggagataagggtattggagaaatgggagacattggacctccaggt
gcaccaggtgtcccaggagcccccggctatggtaagatgggacctccaggtcctgttggt
cagcagggtgttccggggctgccaggatctccaggacatcctgggtcaaagggacgtgat
gggcggtgtaatcctggagactgtgtgagccatcaagtagactacagcccaaagggccca
tctgtcaagggtccctggggggtctga
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integrated database retrieval system
