Takifugu flavidus (sansaifugu): 130529400
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Entry
130529400 CDS
T09160
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs04510
Focal adhesion
tfs04512
ECM-receptor interaction
tfs04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130529400 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130529400 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130529400 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tfs00535
]
130529400 (col9a3)
Proteoglycans [BR:
tfs00535
]
Extracellular matrix (ECM) proteoglycans
Others
130529400 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130529400
NCBI-ProteinID:
XP_056895515
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All DBs
Position
8:12320355..12330344
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AA seq
678 aa
AA seq
DB search
MLVFSALWVLLLCQLLTSSSAQRPGPRGPTGPPGPPGAPGRDGTDGKPGPAGLMGKPGPK
GKDGLPGLPGKPGLPGLPGVDGLTGPDGPSGKDGPSGEGGDAGPPGPAGPPGRGRAGAAG
LPGTNGLPGGVGPQGSPGPEGLPGLPGPPGPDGPPGLPGTLHDLTGDLLCPAICPPGPPG
APGMPGFKGHTGHKGDKGELGKDGEKGDPGPPGPAGVPGTVGLQGPRGLRGLQGPMGSVG
DRGLPGFRGKPGIAGIIGKTGDAGEKGPQGFKGPKGEIGKIGPKGGPGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDAGRHGTVGEKGPNGLPGLQGKAGAKGSKGGVGDPGKPGEAGPSG
EPGIPGEIGVPGDRGIAGPRGVAGGIGPVGNPGPQGIKGFQGVKGGLGDPGLPGPTGIRG
EFGDRGPTGASGPKGDMGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGGSGPQG
ELGPRGPPGKQGAMGFQGEQGAPGIAGKTGVPGKLVSEQQIRELCGPMINDQIAQLAANL
RRPLAPGMVGRPGRPGAPGKSGVAGSIGHPGARGPPGYRGLPGELGDPGPRGDVGEAGDK
GSIGRAIDGPPGDQGYQGLPGVPGIVKDGRDGSPGDPGEPGEPGRLGRTGHQGPPGICDT
SACQGAAAAGKSSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgttctctgcactgtgggtgctcttgctgtgccaacttttgacatcctcctct
gcccagaggccgggccccagaggacccactgggccaccaggacccccaggggcaccgggg
agagacggcactgatggaaaaccaggaccggccggattgatggggaaaccaggtcccaaa
gggaaagacgggttaccgggattaccgggaaaaccgggcctgccgggacttccgggggtg
gacggtttgacgggtcctgatggtccttctgggaaggatggaccctcaggggaaggaggt
gacgctggacctcccgggcccgccggacctcctggccgagggagagccggagcggcaggc
ctgccgggaaccaacgggctgccaggcggcgttggacctcagggttcgccgggccctgag
ggccttccaggacttccaggacctccaggacccgatggaccgcctggtcttcctggaact
cttcatgaccttacaggcgaccttctgtgtcccgccatctgccctcctggtccccccgga
gctcccgggatgccgggctttaagggtcacacgggccacaagggagacaagggagagctg
ggaaaggatggagagaagggtgacccgggtccaccaggtccagcgggtgttcctgggacg
gtcggtctccagggcccgcgtggtctcagaggtctacaaggcccgatgggatccgtagga
gacagaggtcttccaggtttccggggaaaaccgggcatcgccggcatcatcgggaagaca
ggcgacgctggagaaaaaggtccgcagggattcaagggcccaaagggagaaatcggaaag
attggtccaaaaggaggtccggggggtgcggggcccaaaggagagcctggtattcctggc
agggacggcaaagacggaacgcctggattagatggcgagaagggtgatgcagggcgccac
ggcacggtcggagagaagggcccgaacgggcttccgggtctgcaaggaaaagctggtgcg
aagggttcgaagggaggagttggtgatcctggcaaacctggggaggcgggaccctctgga
gagccaggtattcctggcgagatcggcgttccgggtgatagggggatcgcaggacctcga
ggtgtggcgggaggcatcggaccggtgggcaacccgggacctcagggcatcaaaggcttc
cagggggttaaaggaggcttgggggatccaggtcttccaggtccaacgggaatccgtgga
gagttcggtgacaggggtccaacaggagcttctggacctaaaggagacatgggggtagca
ggaagtgacggtctgcctggagaaaacggagaacctggtccttttggaccagtgggacaa
aaaggagagtctgggaagcgaggtgaactgggaccaaagggaggctcgggtccacaagga
gagctggggccaagaggaccccctggaaagcaaggagcgatgggtttccaaggggaacag
ggtgcgcccggaatagcaggaaagacgggcgtcccaggtaaactggtgagcgagcagcaa
atcagggaactctgtggtccgatgatcaatgatcagatcgcccagctggccgctaacctt
cggagacccctggctcctggaatggtgggccgccccggccgtcctggggccccaggaaag
tccggagtggctggttctattggacatccaggtgcccgtggaccaccaggctacagaggc
ctgccaggagaacttggagatccaggtcccagaggtgatgtcggtgaagcaggtgataaa
ggatcaataggaagagccatcgacgggccccctggagaccaaggataccaaggtctccca
ggagtacctggaattgtcaaagacggccgcgatggatctccaggagatccaggtgagcct
ggagagccgggccgattgggtagaaccgggcaccaggggcctcctggcatctgcgacacg
tcagcctgtcagggagcagcagcagccggaaaatcctccaaccccaaaaaccattaa
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