Thermococcus gammatolerans: TGAM_1742
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Entry
TGAM_1742 CDS
T00920
Symbol
rad50
Name
(GenBank) DNA double-strand break repair rad50 ATPase (rad50)
KO
K03546
DNA repair protein SbcC/Rad50
Organism
tga
Thermococcus gammatolerans
Brite
KEGG Orthology (KO) [BR:
tga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tga03400
]
TGAM_1742 (rad50)
DNA repair and recombination proteins [BR:
tga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TGAM_1742 (rad50)
Archaeal homologous recombinant proteins
TGAM_1742 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_15
Rad50_zn_hook
AAA_29
AAA_21
ABC_tran
COG3_N
GAS
SbcC_Walker_B
DUF4315
AAA_16
DUF5082
RsgA_GTPase
AAA_13
DUF1664
Motif
Other DBs
NCBI-ProteinID:
ACS34244
UniProt:
C5A1H5
LinkDB
All DBs
Position
complement(1648287..1650944)
Genome browser
AA seq
885 aa
AA seq
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MRVRKIEIRNFRAHRKSIVEFSDGINLIIGQNGAGKSSILEAIFASLYLGHPSFPKGYLK
ANARVGTGELSLGLEFEHNGKTYRITRTTKKSELLENGKLIAEKSSEVARWVERNVYPLQ
VYTNALYIRQGEIEGIITNREVMEKVLRKVLGIEDYENAERNSAEVIRELKRRRENLKKL
IERKAEVEDRLSEAGKRFAETLRRISELRKRERELSAEVEKLSKLYQEMKERKELIAGLE
KRIALLEKSLASEEELLKEREKRIEELKLELEELEEKRARLEELKPLAEEYIELGKLLKL
KDELSNVEVGLSSLREKLRSLEREMEKREELERKLGELKKKEVETRREYERLKERHKLYQ
RALSILGEAEKHRKELERAGYTVEKLEKELKEIEKAKEELERLREEISKVRERIASLRGK
RAELEANMERLEGAKICPLCRRPIDEHEEGEILAEYRAEISRIESEVKTFGEKLEELRKR
EVELRKLLAREPKLIRLKKTADLLREAEEKLEELGVEELERDAKLFEETKEKLIGLKKEI
RNVKERLEELEGLEKEKRAVEKELHTLEERKADILKRLSERGFSSFDEVEERIGELEKPY
REFLSLKDIPRRIEALEKKLDIEQRKADESRANIARLKAELEKARKELEEARKEFSEEDF
ERAEREYLEKSRALERARAELEGAESLRDEIARLIDELKANLGEIEKAERELELIEKALA
DLTAFREKIARLKAEEELRGLEEVQKLAGELFSEMTEGKYQGIRLRREKRYGKERIELKV
LYAGNEVGIDFLSGGERIALGLAFRLALSLYKVGNLELLILDEPTPFLDEERRKKLVEII
SSQLRKIPQVIIVSHDEELKDAADYVIRVTNAGEARVEVESLGAY
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgagggtcaggaaaatcgagattcggaacttcagggcccacaggaaaagcattgttgag
ttcagcgacggcataaacctgataatcggccagaatggagccgggaagagctcaatcctt
gaggccatctttgcctcgctttacctcggacacccgagcttcccgaagggctatctgaag
gccaacgcccgcgtcggaaccggggagctttccctgggcctggagttcgagcacaacggc
aaaacctaccgcataacccggacgacgaagaagagcgagctcctcgagaacggaaaactt
attgcggagaagagctccgaggtagcgcgctgggtcgagaggaacgtttaccccctgcag
gtctatacgaacgccctctacatccgacagggcgagattgagggcataatcaccaaccgc
gaggtcatggaaaaggttctgcgcaaggttctcggcatagaggactacgagaacgccgag
aggaactcggcagaggtaatccgcgagctgaagaggagaagggagaacctgaagaagctc
atcgagaggaaagctgaagtcgaagacaggctgagcgaggcagggaagaggtttgccgag
acgctgaggaggattagtgagctgaggaagagggaaagggagctttcggccgaggtggag
aagctttccaagctctatcaagagatgaaggaaagaaaggagctgatagccggcctcgag
aagagaatagctctcctcgaaaaatcgctggcgagcgaggaggaacttttgaaggagagg
gagaagaggatagaggagctgaagctcgagctggaggagctggaggagaagagggcgagg
cttgaggagttaaaacctctcgccgaggagtacattgagctgggcaagcttttgaagctg
aaggacgagctctcgaatgttgaggttgggctttcatcgctaagggaaaagctccgctcc
ctcgagagagaaatggagaagcgagaggagctggaaaggaaacttggggagctgaagaag
aaagaggtagagacgaggagggaatacgagaggctcaaggagaggcacaagctctaccag
cgcgccctgtcaatcctcggcgaggccgagaagcacaggaaggagcttgagagggccggc
tacaccgtcgagaagcttgaaaaggaactcaaagaaatcgagaaagccaaggaggagctt
gaaaggctccgcgaggagatttcaaaggtcagggagagaatagcctcgctgaggggcaaa
agggccgagcttgaggcgaacatggagagactggaaggggccaaaatctgtcccctctgc
agaagacccatagacgagcacgaggaaggcgaaatcctggccgagtacagggccgagatt
tcgaggattgagagtgaagttaaaaccttcggggagaagcttgaggagctgaggaagcgc
gaggtcgagctaaggaagctcctcgcgagggagccgaagctgattcgcctcaagaagacg
gccgatttgctcagagaggcggaggagaagcttgaggagctcggcgttgaggagcttgag
agggacgcgaagctcttcgaggaaacgaaggagaagctcatcggcctcaagaaggaaatc
agaaacgttaaggagaggcttgaggagcttgagggccttgagaaggaaaagagggctgta
gagaaggaactccacacccttgaggagagaaaggccgacattctaaagaggctctccgag
aggggattcagctcctttgatgaggtcgaggagaggattggggagcttgagaagccctac
cgcgagttcctctcgctgaaggacattccgaggaggattgaggccctcgagaagaagctc
gacatcgagcagaggaaggccgatgagtcaagggcgaacatagcgcgcttaaaggccgag
ctcgaaaaggcgagaaaagagctggaagaagccaggaaggaattctcggaggaggacttt
gagagggccgagagggaataccttgagaagtcgagagcccttgagagggcgagggccgag
cttgagggagcggagagcctgagggacgagatagcccgcttaatagacgagctgaaggcg
aacctcggggagattgagaaggccgagagggagctcgagctcatcgagaaggcgctggca
gacctgacggccttcagggaaaagatagcccggctgaaggcggaggaagagcttagaggg
cttgaagaggtgcagaagctggctggggagctgttctcggagatgaccgagggcaagtat
caggggataaggctgaggcgcgagaagcgctatgggaaagagcggattgagcttaaagtc
ctctacgcgggcaacgaagttggaatagacttcctcagcggtggggagaggatagcgctc
ggtctggccttccgccttgccctctcgctctacaaggtgggcaaccttgagctcctcata
ctggacgagccaacgcccttcctcgacgaggagaggaggaagaagctcgtggagattata
tcgagccagctgagaaaaatacctcaggtaatcatcgtctcgcacgacgaagaactgaag
gacgcggccgattacgtgataagggttaccaacgccggtgaagcgagggtggaggtggag
agccttggagcgtattga
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