Tinamus guttatus (white-throated tinamou): 104577820
Help
Entry
104577820 CDS
T08560
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tgt04147
]
104577820 (COL18A1)
00535 Proteoglycans [BR:
tgt00535
]
104577820 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
tgt00536
]
104577820 (COL18A1)
Exosome [BR:
tgt04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104577820 (COL18A1)
Proteoglycans [BR:
tgt00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104577820 (COL18A1)
Glycosaminoglycan binding proteins [BR:
tgt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104577820 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
104577820
NCBI-ProteinID:
XP_010223621
LinkDB
All DBs
Position
Unknown
AA seq
1379 aa
AA seq
DB search
MHLAAGHLPLPCDSLPAEDGGYSCVFINVSAENLSTEVSLLELIGDPPPEEIQKIYGPDN
NPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAITDSLQSIIYVGVK
LSELRAGKQQIIFYYTEPGSKSSYAAATFAVPTPLNQXAISVEEDEVVLYLDCEEHERVR
FERSPDEMELEDGSGLFVAQAGGADPDKYQGVIADLKLKGDPRAAEHQCEEEEDDAEEVS
GDFGSGAEDGRHTLGRDRGVPGLVDAVPVTSPPVAAGSVPGIAAGSLPQAERPRTEEMLR
AAAGGTGAKGEKGEKGERGPKGDSGSGGVSGTGGAKGAKGEKGDAGIKPGEPGPPGTAAL
PPGGSGAERLNGPPGPSGPPGPPGKDGAPGRDGEPGDPGEDGKPVSPQGFPGTPGEPGMK
GEKGDPGVGPRGPPGPPGPPGPPGPSFRHDKLTFIDMEGSGFGGDPDTLRGPRGPPGPPG
PPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGSPGPPGPAGPPGPPGTDGMVGQPGPKGE
RGDVGDLGLPGAPGPKGSKGETGPAGAPGEMGLAGLPGPIGPRGQPGPPGPPGPPGPGYE
AGFGDMEGSGLPFAAGTPGPRGPEGPQGLPGLPGTKGDAGSPGQPGLPGLKGDPGLPGVD
GRPGLEGFPGPQGPKGDRGSPGEKGERGQDGVGLPGPPGLPGPPGQVVYISNEDKSLAAL
PGPEGRPGHAGFPVGHWLGLCGAARALCSEGWSTRELWGPTGPKGEPGSPGFQGSPGLKG
EKGEPGVIISPDGTIIAANVKGEKGEPGPRGPVGPSGPHGRSGQKGEIGFPGRPGRPGMN
GLKGEKGDPADVSGLLGPRGLPGPPGPPGPPGPPGSVVYDNNNAFGDTSHPALPAFPGFH
QFPGQKGEKGDVGAPGPPGQFPYDLSRFSANLRGEKGETGLKGEKGEPGGTPLYGSSISA
LPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH
RQAISIPGPPGPPGPPGPPGSSGTSPGLHALPTYQAMLSAAHELPEGWLVFLADRQELYV
RVRNGFRKVLLEEHTLISSSALDNEVYDKPPSVHYSHGGAVPSGSQHPYQPRGPLHPLRN
HSPPPTARPWRGDDIVANQHRLPEQPTLHHGTQHQQELLNSYYINRRPDPAPVAAHVHQD
FQPALHLVALNAPLSGSMRGIRGADFQCFQQAREVGLLGTFRAFLSSRLQDLYSIVRRAD
RSTVPIVNLRDEVLFSNWEALFAGSEAPLRPGARILSFDGRDVLRDSAWXVHDARGGQXP
KGRRLPESYCETWRTEERAAVGQASSLSTGKLLEQAASSCQNTFVVLCIENSFMTASKK
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgcacttggccgctgggcacctgcctctgccatgcgactcgctgcctgcggaggacgga
gggtattcttgtgtctttattaacgtttctgcagagaatttgagcacagaagtcagcctg
ctggagctgatcggagaccccccgccagaggagatccaaaaaatttacggccccgacaac
aacccaggctatgtctttggacccaatgccaacacaggccaggtggcccggtaccacctg
ccaagccccttttaccgggacttttctctcctgttccacatccagcccaccaccccccgg
gccggcgtgctctttgccatcacagactcattgcagagtatcatctatgtgggcgtcaag
ctctcggagctgcgggcgggtaagcagcagatcatcttctactacacagagccaggctcc
aagagctcctacgcggcggccaccttcgccgtgcccaccccgctgaaccagnntgccatc
agcgtggaggaggacgaggtcgtcctctacctggactgtgaggagcacgagcgggtccgc
ttcgagcgctccccggatgagatggagctggaagatggttctgggctcttcgtggctcag
gctggaggagctgacccagataaataccagggggtgattgccgacttgaagctcaaagga
gatccccgggcagccgagcaccagtgtgaggaagaggaggatgatgctgaagaggtctcg
ggagattttggcagcggagccgaggatggacgccataccttgggaagagacaggggtgtc
ccagggctggtggatgctgtccctgtcacctctccgcccgtggctgcgggcagcgtgccg
ggcatcgctgcgggatccctgccgcaagcggagcgccccaggacagaggagatgctgcgg
gcagctgcaggaggcactggtgccaaaggcgagaagggggagaagggggaacgtggcccg
aaaggggactcgggaagtggcggcgtctcggggacgggcggcgccaaaggtgcaaaggga
gaaaaaggtgatgcaggcatcaagcccggcgagcccggcccccccgggactgctgcgctt
ccccccggcggctccggcgcggagcggctcaacggaccaccaggaccctccggtcctccg
ggaccgcccggcaaagacggagcgcccggcagagatggagagcctggcgatcctggcgag
gatggcaaacccgtaagtccccagggcttccccgggacaccgggagagccggggatgaag
ggtgagaagggtgatcctggagttggccccaggggcccacctggaccaccgggcccccct
ggaccgcctggaccttccttcagacatgacaagctgaccttcatcgacatggagggctcc
ggctttggtggcgatccagacaccctgcggggtccccgtgggccacctgggcccccaggg
cctcccggcgtgcccggcttgccaggggagccgggacgattcggcatgaaccgcacggac
ctgccgggaccaccagggctgccgggccgagacgggagccctgggccaccagggccagcg
ggtcctccaggtcctcctgggacagacgggatggttgggcagccggggcccaaaggagag
cggggtgatgtgggagacctgggcctccctggagcacctggacccaagggcagcaaagga
gaaacagggccagcaggagcaccaggagaaatggggctagctggtcttcctggacccatc
ggacctcgagggcagccaggtcccccaggccctcctggaccaccagggcctgggtacgaa
gctggatttggtgacatggagggctcagggctgccatttgcagctggtacccctggacca
cgcgggcctgaaggaccacaggggctgccaggattgccgggaaccaagggagatgctggc
agccctgggcagcctggcttgccaggactgaagggagaccctggcctgcctggtgtggat
ggccgccccggcctggagggcttccccggtccacagggacccaaaggtgacagaggcagc
cccggtgagaagggcgagcgaggccaagatggtgttgggttgcctggccctcccggctta
cctggcccaccaggacaggtcgtctacatctcaaacgaagacaagtctttggcagctttg
ccaggcccggagggcagaccgggccatgccggcttcccggtaggtcactggcttgggctt
tgtggggccgcaagggcgctgtgcagcgaggggtggagcacgagggagctctggggcccc
acgggaccgaaaggagagccggggtcgcctggtttccagggctccccagggctgaagggt
gagaagggagagcctggtgtcatcattagcccagacgggaccatcatagctgctaatgtg
aaaggagaaaagggggagccagggccacggggaccagtgggcccatctggcccccacgga
cggtctggacagaagggagaaattggctttccgggcagacctgggcggcctggcatgaac
ggcctcaagggcgagaagggcgaccctgccgacgtcagtggcctgctgggcccgcggggt
ctcccaggtccccctggccctccaggacctcccgggccacctggcagtgttgtctacgac
aacaacaacgccttcggtgacaccagccatcctgcgctgccggccttccctggcttccac
cagtttccaggacaaaagggagaaaaaggagatgttggtgctccaggtcccccaggccag
ttcccgtatgacctgagccgattcagtgccaacttgcggggtgagaaaggggagacgggc
ctcaagggagagaagggtgaaccaggcgggacaccactgtatggctccagcatctccgcg
ctgccaggcccaccggggccccagggttaccctggcctgccgggtccaaagggggacagt
attgttggaccaccagggcctccaggacctcagggacctcctggcattggatatgaaggg
cggcagggtcctcctggccctcctggcccccctggtcctccctccttcccaggcccgcac
aggcaagctatcagcattcctggccctcctggcccaccaggaccccctggcccaccaggt
tccagcgggacatctcctgggctacatgccctgccaacgtaccaggccatgctgagcgct
gctcacgagctgcccgagggctggcttgtcttcctggctgaccggcaggagctctacgtc
cgcgtgcgcaatggtttccgcaaggtgctgctcgaggagcacaccctgatctccagctcc
gctctggacaacgaagtctacgacaagccacccagcgtccactactctcacggtggtgct
gtcccatcagggtctcagcacccctaccagcctcgtgggcctcttcaccctctccgcaac
cacagcccgccacccactgcccggccctggcgaggggacgacattgtggccaaccagcac
cgccttcccgagcagcccacgctccatcatggcacccagcatcagcaagagctcctgaac
agctactacatcaaccgccggccagatccagcccctgtagccgcccacgtgcaccaggac
ttccagcctgccctccacctggtggccttgaatgcccctctgagcggcagcatgcgcggc
atccgcggcgccgacttccagtgcttccagcaagcccgcgaggtcggtctcctgggcacc
ttccgcgccttcctctcctcccgcctccaggacctctacagcatcgtgcgcagggctgac
cgcagcacggtgcccatcgtcaacctccgggacgaagtgctcttcagtaactgggaggcc
ctctttgcgggcagcgaggccccgctgcggcccggcgcccgcatcctctccttcgacggc
cgggacgtcctgcgggactcggcgtggtgagtgcatgatgcccggggcgggcagnncccc
aagggccggcggctgcccgagagctactgcgagacgtggaggacagaggagcgagctgcc
gtgggccaggcctcctcgctgagcaccgggaagctcctggagcaggcggccagcagctgc
cagaacaccttcgtggtgctgtgcattgagaacagcttcatgactgcctccaaaaaataa
DBGET
integrated database retrieval system
