Taeniopygia guttata (zebra finch): 100221983
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Entry
100221983 CDS
T01082
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100221983 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgu03041
]
100221983 (DDX46)
Enzymes [BR:
tgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100221983 (DDX46)
Spliceosome [BR:
tgu03041
]
Complex A
U2 snRNP components
U2 related factors
100221983 (DDX46)
Complex B
100221983 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
100221983
NCBI-ProteinID:
XP_012430798
Ensembl:
ENSTGUG00000001260
LinkDB
All DBs
Position
13:9153705..9173077
Genome browser
AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRDRDRRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRDRRRSRSRSRGRRSRSSSPSKNRKTENRSRSKEK
TEGVEISKEKKKDKDDKEEEKDKDATTNAVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGNEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKTGPTVTKVVTVVTTKKAAAESEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
LEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GYAYTFITEDQARYAGDIIKALELSGNPIPPDLEKLWADFKDQQKAEGKLIKKSSGFSGK
GFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTS
NAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVMVPFHFKDVMQQATNAILRGGTIQA
PTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWK
VTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTNKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtccaggcattaccggaagcgctctgcgtcccgggggcgctccgggagc
cgttccaggagccgttccccgtcggacaagaggaagcgcgaggacaggcgctcccggagc
cgggaccgggaccgcaggcgggagaggtcgcgcagcagggacaagagaaggtctcgctcg
cgggacagaaagcgtcaaagacgttcaaggagcagagaaagggaacggagccgagagaga
agacgatcccggagccgagacaggaggcgctcaaggagcaggagtagagggagacggtcg
cgatcctccagtccaagcaagaacaggaaaacagaaaacaggtcaagatctaaagaaaag
acagaaggtgtggaaatctccaaagaaaagaaaaaagacaaagatgacaaagaggaagag
aaagataaagatgctaccacaaatgctgtggccactgagaattttgatcagaacaaacta
gaagaagaaatgagaaaacgaaaagaaagagtggagaaatggagggaagaacaacgcaag
aaggcaatggaaaacataggagagctaaaaaaagaaattgaagagatgaaacaggggaaa
aaatggagtttagaagatgatgatgatgatgaagaggaaactgcagaaggagaaaaagaa
ggcaatgaggttgaagatgaggagttagatcctttagatgcttatatggaagaagtaaaa
gaagaggtcaagaagttcaatatgagaagtgtgaaaggtggaggtgggagtgaaaagaaa
actggaccaactgttaccaaggtggttactgtggtgacaaccaaaaaggcagctgctgag
tcagaaaagaagaaaggagaactcatggagaatgaccaagatgcaatggagtattcctca
gaagaggaggaagttgaccttcagactgccctgactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcatggaaaaatagaatatgaacctttcaggaaaaacttctat
gttgaagtaccagaactagctaaaatgactcaagaagaggttaatgtgtacaggctggag
ctggaaggaattacagtcaagggaaaaggctgtcccaaaccaataaaaacctgggtacaa
tgtggtatttccatgaagattctcactgccctcaaaaaacatggctatgaaaagcccacg
ccgattcagacccaggctatcccagcaattatgaacggacgggatttgattggcattgct
aaaacaggaagtggaaaaactattgcctttctgttgcccatgttcagacacattatggat
cagagagcattagaagaaggagaaggtccaatagctgtcattatgacacctacacgtgag
ttggctttgcagattaccaaggagtgcaagaaattctccaagacacttgggcttcgagtt
gtctgtgtttatggaggaacaggaatcagtgaacagatagctgaactcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggacgg
gtgacaaacctgcgtagagtcacgtacgttgtacttgatgaagctgacagaatgtttgac
atggggtttgaacctcaggtcatgcgcattgtagacaacgtcaggcctgaccgtcagact
gtcatgttctctgctactttccccagagctatggaggccctggctcgcaggatcctcagc
aaacctatagaggtgcaggtgggaggcagaagtgttgtctgttctgatgtggagcaacac
gtgattgtcatagaagaggagaacaaatttctgaagttactggagctactgggacattat
caggagaaaggatctgttatcatatttgtagataagcaagaacacgctgatgggttattg
aaagatttaatgagggcctcttatccttgcttgtctctccatggaggtattgatcagtat
gacagggacagcatcattaatgacttcaagaatggaacctgcaaactgctggtggccaca
tctgtagcagccaggggcttggatgtgaagcagctgatgctggtggtcaattacagctgt
cccaaccactatgaggactacgtgcaccgagccggccgcactgggcgagctggcaacaaa
ggatatgcatatacattcattactgaggatcaggcacgttatgctggtgatatcattaag
gctttggaattgtctgggaatccaattcctcctgatctggagaagctctgggctgacttc
aaagaccaacagaaggctgagggaaagttgattaaaaaaagcagtggattctctggcaaa
ggttttaaatttgatgaaacagaacaggctttggctaatgaaagaaagaagctacaaaaa
gcagctcttggcttgcaagattcagatgatgaagatacagctgttgatattgatgaacaa
attgaaagcatgttcaattcaaagaaaagagtaaaagacatggcagcaccaggaacatca
aatgctcctacaccatcagctgggaatgcagaaaaattggaaattgctaaaagattggct
ttgagaatcaatgcccagaagaatcttggagcagaggcacaagtcatggttcccttccac
tttaaggatgtgatgcagcaggctacaaatgctatcctgagaggaggcacaatccaagct
cctactgtgtctgccaagaccattgcagagcaactggctgaaaagatcaatgccaagctc
aattatgtacccatagagaagcaagaagaagagaaacaggatggaggacagaatgaatcc
ttcaagagatatgaagaggaattagagatcaatgacttcccacagactgccagatggaaa
gttacctccaaagaagcactgcagagaatcagtgaatattctgaagctgccattacaatc
agaggaacttacttccctccaggcaaagaacccaaagaaggagaacgaaagatttatttg
gctatagaaagtgccaatgaacttgctgtacagaaagcaaaggcagaaatcacacgactt
ataaaagaggagctcatcagattgcaaaattcttaccaaccaaccaacaaaggaagatac
aaagttctatga
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