Taeniopygia guttata (zebra finch): 100225693
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Entry
100225693 CDS
T01082
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100225693 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100225693 (LIG4)
Enzymes [BR:
tgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100225693 (LIG4)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100225693 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
100225693
NCBI-ProteinID:
XP_002198469
Ensembl:
ENSTGUG00000010795
LinkDB
All DBs
Position
1:complement(79620387..79624651)
Genome browser
AA seq
911 aa
AA seq
DB search
MASAPVSQPPKKTVASHVPFADLCSTLERIQKSKSRPEKTKYFKDFLDSWRKFHDALHQK
EKDVTDSFYPAMRLILPHLERERMAYGIKETMLAKLYIELLSLPKDGKDAARLLNYRTPT
GSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTIFSVFHPDAVELHNVTTDLEKVCRQLHDPSVSLS
DVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQSFMQKGNKFDIKRMVE
DSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHVVHKRSARTRKEVID
ALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPPG
NILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMTS
DMLEDLRNKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKVS
NVFEDVEFCVMTGMGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMCPDTKEHFAREYDCYGDSYTANTDVTQLKE
VFSRMKDRKAIPLDLIAELEERYWWNNCQLGMFRGSTIYVDCYAVVNEPQSKIPGTTLSI
RALELRFYGAKVVSHLEEGVSHVVVGEDCSRVEEMKALRRTFGKKFKIVSELWVTHSVEE
GIAKNENQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcacagcctcctaaaaaaacagtggcctctcacgtgcctttt
gcagatctatgttctactctggagcgaatacagaagtccaaatctcgtccagagaaaacc
aagtatttcaaggattttctggattcctggaggaaattccatgatgcacttcatcagaaa
gagaaagatgtcacagattccttttacccagctatgcggcttattctcccacatttggaa
agagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaactg
cttagtttaccaaaagatggaaaagatgctgcaaggcttttaaattacagaacgcctacg
ggctcacgtggagatgctggagattttgcaatgattgcgtacttcgtgctaaaacctagg
agcccaaaacaaggcaggctgacaatagaacaagtcaatgaacatttagatgcgattgct
aataataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaattacc
cagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaagctt
ggtgttagtcaacaaactatattttcagtttttcatcctgatgccgttgaattacacaat
gttactactgatttggaaaaagtttgcagacagctgcatgatccctctgtctcacttagt
gatgtttctatcatgttgttttctgcctttaagccaatgcttgctgctattgcagatgtc
cagcaaattgagaaacaaatgagtaaccagacattctacatagaaaccaagctggatggt
gaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatgggttt
gactatactcagcagtttggtgcttcaccccttgaaggttcattaacaccatttattcat
aatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttacaat
cctgaggcacaaagttttatgcaaaaaggaaacaaatttgacataaaaagaatggtggag
gattctgatctgcagacttgcttctgtgtatttgatgtattgatggttaatgatcagaag
ctggggcatgaagtactaagcaaaagatatgaaatcttaagtagtgtgtttacccctgta
aagggcaggatacatgttgtccataagagaagtgctagaacaagaaaagaagtaattgat
gctttaaatgaagccatagataacagagaggaaggaattatggtgaaagatcccatgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtcaat
ggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtctcgt
ggtggaatgatgtcacattttctatgcgctgttgcagagacgccccctccgaatgaaaaa
ccgaccattttccactccatttgtcgtgttggctctggctatactatgaaagagttgtat
gatctaggcttgaaactggctaaacactggaagccctaccataggaaggaccctcctggt
aacattttgtgtggagctgaaaaacctgaaatgtacattgaaccttgtaactctgtcata
gttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtactttg
agattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgacttca
gacatgttagaagatctcagaaacaaagcacaaggaaagctggcatctaagcaccttcat
atcgatgagtatgatgagccacatgagaaaaaaaggaaaacagtctcaaaggtgaggaag
gtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtttca
aatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaagtct
gagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccagag
acttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttccaac
aaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctggtg
ccttggcaaccagcctttatgattcacatgtgtcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagttacacagcaaacacagatgttacacagctcaaggaa
gtgttctcaagaatgaaagacagaaaggcaatacctctggacttgattgcagagctagaa
gaacgttactggtggaacaattgtcagctcggtatgttcagaggaagcactatttatgtg
gactgttatgctgttgttaatgagcctcaaagcaaaatccctggaactacactttcaatt
agagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagaaggtgtc
tcccatgtcgttgtaggagaagattgttcacgggtagaggagatgaaagcactcaggaga
acatttgggaaaaaatttaaaattgtatccgagctgtgggtgacgcactcagtggaggaa
ggaatcgcaaagaatgaaaatcagtacttagtttaa
DBGET
integrated database retrieval system
