Taeniopygia guttata (zebra finch): 115490908
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Entry
115490908 CDS
T01082
Symbol
USHBP1
Name
(RefSeq) Usher syndrome type-1C protein-binding protein 1 isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tgu03037
]
115490908 (USHBP1)
Cilium and associated proteins [BR:
tgu03037
]
Primary cilia and associated proteins
USH complex and associated proteins
115490908 (USHBP1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
SR-25
DUF755
ATG16
AF-4
Mis12
DUF6166
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
115490908
NCBI-ProteinID:
XP_032599826
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All DBs
Position
28:complement(2860784..2867963)
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AA seq
928 aa
AA seq
DB search
MGTGRERGNRGRTGGPGENGGNGKEWEPGQDRDRTGTPGLDWDLLGARVWSQDILDPQME
PGPAGSTSLELGCAGSPESHGQDDPGMEEERPVGATRSAPGAERDTATGTATAARAPRGE
EEEDEEEEEEEEEEEEEEEDDEDVASDTEDIPLLAGVAPPQQRPASEDEDGWEATATVPT
VATASGPDGERRAPRHRVCHRRSVPALTAAVSPPLSPARSPDLFERLQHAVSSLERAAFS
RHRQPPAWPPPAPAWHRALQSLEELSRSPGWARPGRAAGPGLPAEAAEAAARNASLRAAL
EQRDRELGRATAALRALRGERERLQGKVRDLREALARLEELEASGSDTPGVGDTPGTGDT
PGVGDTPGTGDSPGTGDTPGVGDTPGTGDSPGTGDSPGPSSPPGHRPSTGPSQEQEEQLQ
QLQGLLARLQEANRELAAALGECKGEAERLSMELGRRESRCSGLRLALRCSERCGEAYAA
LLDRVRAKVAPEGGTRGGTAAEPSPGRAPGPGPATPEPGPGPATPEPAEPDSREDPADSP
GARSSRGMEEGALRELIRRLRAEQAAVEGSLLDAPEPSEPPRERDPRGRAERALREARAL
LPGWRRPEKEELLQELAVLKEALAELRTRLQLAQKEKRALELLLAGHGPRQAALRLLLQH
RQRERRRDRDRERDGASDSSSGSSSGSSSSSNSGSSSEQVGMGATGPFPGFGGSRGTGDT
PGISAGRADGPGRGDGSAEPPGPRENQGGAAPDPGQGGAAAGPGPGAAAGPGAGQRRQPR
PAAAERRRHRRAPAGTPLAGPGAARGAAETGGAAAAAAGAGGGAAGPARPHGASPGPEPA
GPAARRRDLHLGSAGSPRGDLEICGESRTSMGKPQKSTGKPEHLWGNHRDPRGNLKIYGE
TTEIHAETQKSIGKHGMPRGNPEICGEI
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggggactgggagagaacgagggaaccgcgggagaactgggggtccaggagagaatggg
ggaaacgggaaagaatgggaacctgggcaggaccgggacagaacgggaaccccagggttg
gactgggacctgctgggagcccgggtgtggagccaggacatcctggacccccagatggaa
ccgggacctgctgggagcaccagtttggaactgggatgtgctgggagccctgagagccac
gggcaggacgatcccggaatggaggaggaaaggccggtaggtgccacccgctctgccccc
ggagctgaacgggacacggccaccggcacggccaccgcggcccgggccccgcgcggggag
gaggaggaggacgaggaagaggaggaggaggaggaggaggaagaagaagaggaggaggat
gacgaggacgtggccagcgacaccgaggacatcccgctgctggcaggggtggccccgcca
cagcagcgccccgccagcgaggatgaggacggctgggaggccaccgccactgtccccact
gtcgccactgccagcggcccggacggtgagcgccgcgccccgcgccaccgcgtgtgccac
cgccgctctgtccccgccctgaccgcggccgtgtcgccgccgctgtccccagcgcgcagc
ccggacctcttcgagcggctgcagcacgccgtgagctccctggagcgcgccgccttctcc
cgccaccggcagccaccggcgtggccgccgcccgccccggcgtggcaccgagcgctgcag
agcctggaggagctgagccggagcccgggctgggcgcgcccggggcgggcggcggggccg
gggctcccggcggaggcggcggaggcggcggcgaggaacgcgagcctgcgggcagccctg
gagcaacgggaccgggagctgggccgggccacggcggcgctgcgggcgctgcggggcgag
cgggagcgcctgcagggcaaggtgcgggacctgcgggaggctctggccaggctggaggag
ctggaggcgtctggcagcgacacccccggggtcggtgacacccccgggaccggcgacacc
cccggggtcggtgacacccccgggaccggtgacagccccgggaccggtgacacccccggg
gtcggtgacacccccgggaccggtgacagccccgggaccggtgacagccccgggcccagc
agccccccggggcaccggccctcgacgggccccagccaggagcaggaggagcagctgcag
cagctgcaggggctgctggcgcggctgcaggaggcgaaccgggagctggcggcggcgctg
ggcgagtgcaagggcgaggcggagcggctgagcatggagctgggccggagagagtcccgc
tgcagcgggctgcggctggcactgcgctgcagcgagcgctgcggggaggcctacgccgcc
ctcctggaccgggtgcgggcaaaggtggcaccggagggtggcacccgtgggggaaccgca
gcggaaccgagcccgggccgcgcaccgggacccggccccgccacaccggaaccgggaccc
ggccccgccacaccggagcccgcggagccggacagccgtgaggaccccgcggacagcccc
ggggctcgcagctcccgggggatggaggagggagcgctgcgggaactgatccggcggctc
cgcgccgagcaggcggcggtggaggggtccctgctggacgcccccgagccctcggagccc
ccccgggagcgggacccccgaggccgggcggagcgggcgctgagggaagcgcgggcgctg
ctgcccggctggaggcggcccgagaaggaggagctgctgcaggagctggccgtgctcaag
gaggcgctggcggagctgcggacgcggctgcagttggcccagaaggagaagcgagccctg
gagctgctcctggccgggcacggaccccgccaggccgcgctgcgcctcctgctgcagcac
cggcagcgggagcggcggcgggaccgggaccgggagcgggacggagcctccgacagcagc
tccggcagcagctccggcagcagctccagcagcaactccggcagcagctccgagcaggta
gggatgggtgccaccgggccgttcccggggttcgggggatcccgaggcacgggagacacc
ccgggaatctcggcaggacgcgcggatgggccggggcgcggcgatggctccgcagagccc
cccggaccccgagagaaccagggaggagctgctccggatccgggccagggcggagcggct
gcggggccgggcccgggagctgctgcgggccctggagcggggcagcgccgccagccgcgc
ccggcagcagcggagcgccgccgccaccgccgggctcctgcaggcacaccgctcgctggc
cctggcgctgcgcggggcgcggcggagacaggcggagcagctgcggcggctgcgggcgcg
ggcggcggcgctgcggggccagcacggccgcacggagcgagccctggcccggagcctgcg
ggacctgcagcgcggcggcgagacctgcatctagggagcgccgggagcccgcggggagac
ctggaaatctgcggggaaagccgaacgtctatggggaaaccacagaaatccaccgggaaa
cccgaacatctatggggaaaccacagagatccacggggaaatctgaaaatctatggggaa
accacagaaatccatgcagaaacccagaaatccatagggaaacatggaatgccacgggga
aacccggaaatctgtggggaaatctga
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