KEGG   Thermococcus sp. AM4: TAM4_1751
Entry
TAM4_1751         CDS       T01638                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tha  Thermococcus sp. AM4
Pathway
tha03030  DNA replication
tha03410  Base excision repair
tha03420  Nucleotide excision repair
tha03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TAM4_1751
   03410 Base excision repair
    TAM4_1751
   03420 Nucleotide excision repair
    TAM4_1751
   03430 Mismatch repair
    TAM4_1751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tha03032]
    TAM4_1751
   03400 DNA repair and recombination proteins [BR:tha03400]
    TAM4_1751
Enzymes [BR:tha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TAM4_1751
    6.5.1.6  DNA ligase (ATP or NAD+)
     TAM4_1751
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TAM4_1751
DNA replication proteins [BR:tha03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TAM4_1751
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TAM4_1751
DNA repair and recombination proteins [BR:tha03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TAM4_1751
   NER (nucleotide excision repair)
    Other NER factors
     TAM4_1751
   MMR (mismatch excision repair)
    Other MMR factors
     TAM4_1751
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Tcp10_C TPR_1
Other DBs
NCBI-ProteinID: EEB74384
UniProt: B7R216
LinkDB
Position
990656..992344
AA seq 562 aa
MGDMKYLELAELYRRLEKTTLKTLKTKFVADFLKKTPDDLLEIVPYLILGKVFPDWDERE
LGVGEKLLIRAVSMATGVPEKEIENSIKDTGDLGESVALALKKRKQKSFFSQPLTIKRVY
NTFVKVAEASGEGSQDRKMKYLANLFMDATPEEGKYLARTVLGTMRTGVAEGILRDAIAE
AFKVKPELVERAYMLTSDFGYVTRVAKLEGNEGLSKVSIQIGKPIRPMLAQNAANVKEAL
IEMGGEAAFEIKYDGARVQVHRDGDRVIIYSRRLENVTRSIPEIVEAVKASLRPSKVIVE
GELVAVGENGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVEGESLIDTKFAER
RKKLEESVEESDKIKLAEQLVTKKVDEAEEFYKRALELGHEGLMAKRLDSVYEPGNRGKK
WLKIKPTMENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPESGEFVPVGKVGSGFTDEDLI
EFTKMLKPLIVREEGKFVEIQPKVVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPE
EADTIERVAQLYELQEKFKAKR
NT seq 1689 nt   +upstreamnt  +downstreamnt
gtgggcgacatgaagtatttagagctggccgagctttaccggaggcttgagaagaccacg
ctcaaaacgctcaagacgaaatttgtggcggacttcctcaagaagacgcccgacgatctg
ctcgagatagttccataccttattctcggcaaggtcttccccgattgggacgagcgcgag
ctcggcgtcggtgagaaactcctcataagggccgtttcgatggcgacgggcgttcccgag
aaggaaatcgagaactcgattaaggacacgggggatttgggcgagagtgtggctttggct
ctaaagaagagaaagcagaagagcttcttcagccagcccctcacgataaagcgcgtttac
aacaccttcgtcaaggttgccgaggcgagcggagaggggagccaggacaggaagatgaag
tacctggccaatctcttcatggacgcgacgcccgaggagggcaaatacctggcaagaaca
gtcctcgggacgatgagaaccggcgtcgccgagggaatcctgcgcgatgccatagcagag
gccttcaaggtgaagcccgagctggtagagagggcctacatgctcacgagcgacttcggc
tacgtgacaagggttgccaagctcgaggggaacgaggggctctcaaaggttagcatacag
attgggaagccgataaggccgatgctagctcaaaacgccgccaacgtcaaggaagcgcta
atcgagatgggcggtgaggcagccttcgagattaagtacgacggcgcgcgcgttcaggtc
caccgcgacggggacagggtgataatctactcgaggagacttgagaacgtcacccgctcg
attcccgagatagttgaggcggtgaaggcctcactgaggccttccaaggtcatagttgag
ggcgagcttgttgcggtaggcgagaacggtcgtccaaggcccttccagtacgtcctgagg
cgctttaggaggaagtacaacatcgaggagatgatcgagaagattccgctcgagctcaac
ctcttcgacatcctctacgttgaaggggagagcctcatcgacacgaagttcgccgagagg
agaaagaagctcgaggagagcgtcgaggaaagcgataagataaagctcgccgaacagctc
gttacgaagaaggtcgacgaggccgaggagttctacaaacgcgctctggagctcggccac
gaggggctaatggcgaagaggctggactccgtctacgagcccggaaaccgcggtaagaag
tggctgaagatcaagcccacgatggagaacctcgacctcgtcattatcggagccgagtgg
ggcgagggaagaagagcccacctcctcggttccttcctcgttgcggcctacgatccggag
agcggtgagttcgtcccggtgggcaaggtcgggagcggtttcaccgatgaagacttgatc
gagttcaccaagatgctcaagcccctgatcgtcagggaggaagggaagttcgtcgagata
cagccgaaggtcgtcatcgaagtaacgtatcaggagatacagaagagccccaagtataag
agcggtttcgcgttaaggttcccgcgctacgtggcgctgagggaagataaaagcccggag
gaggcggacaccatagagagggtcgcccagctctacgagctccaagagaagttcaaggcg
aagaggtga

DBGET integrated database retrieval system