Tarenaya hassleriana (spider flower): 104826172
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Entry
104826172 CDS
T04125
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03440
Homologous recombination
thj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104826172
03450 Non-homologous end-joining
104826172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thj03032
]
104826172
03400 DNA repair and recombination proteins [BR:
thj03400
]
104826172
DNA replication proteins [BR:
thj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
104826172
DNA repair and recombination proteins [BR:
thj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
104826172
BRCA1-C complex
104826172
NHEJ (non-homologous end-joining)
MRX complex
104826172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_21
Rad50_zn_hook
SbcC_Walker_B
SMC_N
PI3K_P85_iSH2
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104826172
NCBI-ProteinID:
XP_010557039
LinkDB
All DBs
Position
Unknown
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGANGAGKTTIIECLKVSCTGEMPPNAR
SGHSFIHDPKVSGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQTQEIKTYKLKLENLQTLKDAAYKLRECIAQDQERTESSKV
QMAELETSIQKVDAEVHNKEMMLKDLRKLQDQISRKTAERSTLFKEQQKQYAALAEENED
TDEELKEWKTKFEERIAILETKIRKLEREMDDTETTISSLQNAKTNCMLEMSKLQTEAEA
HMSLKNERDATIQKIFSRHNLGTIPSFPFSTEVILNLTNRIKSRLSEIEVDLQDKKKSNE
TAVSTTWDRYMDANDRWKSVEAQKRAKDEIKSGILKRIEEKEIERETFDLEISSVDLTQI
DEREKNVQLELERKTKQHSEQDFESKIEQKQHEIYSIEQKIKTLNRERDVMAGDAEDRVK
LSLKKTEVENVRKKHKKIIDDCKDKIRGMLKGRLPAEKDLKKEIVQALRSTEREYDDLSL
KSREAEKEVNMLQMKIQEVNNSLSKHQKDKESRKRYIESKLQVLNQESYTIDAYPKLLES
AKERRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDSFVKKQRVKASS
SAEHVKVLASESSNADSVFQQLDKLRSVFEEYSKLTNETIPLCERSLKELREELEQKSQA
LDDVLGILAQVKADKDSIEALVQPLDNAERLFQEIQTYQKQIEDLEYKLDFRGLGVKTME
EIQSDLSSLQSTKDKLHDELEKLRDEQIYMERDLSCLQARWHALREEKSKVANLLRDVTK
TDEELERLAEDKSQIELDMKHLSEALGPLSREKEKLLSDYNALKVKLNQEYEELAEKKRN
YQQEVEALLKANSKINEYNDLKKGERLNGIQEKQRVSESQLQTCQAKKDEISAELNKSKD
LMRNQDHLRRNIEDNLNYRRTKAEVEELTREIESLEESILKIGGVSAVEAELVKLSQERE
RLLSELNRGRGTVSVYESNISKNRVELKQTQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMDDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRISKDDLQHSIIEAQDIFN
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgataagatgctgatcaaaggaatccggagcttcgacccggagaacaag
aatgtcatcactttcttcaggcctctaacccttatcgtcggcgccaatggagctgggaaa
actacgattatagagtgtttgaaggtttcttgcaccggagagatgcccccgaacgcaagg
tccggccacagcttcattcatgatcccaaggtttcgggggaaacagagacgaaagcacaa
attaagctgcgatttaagacagctgcggggaaggatgtggtatgcataaggtcatttcag
ctgacacaaaaggcttcaaagatggaattcaaggcaatcgaaagcgtgcttcaaactatt
aatccgcacaccggggagaaagtatgtctcagctacagatgcgctgatatggatagagag
atacctgctttgatgggtgtatcaaaagctatcttggaaaatgttatatttgttcaccaa
gatgagtctaattggccactccaagatccttctacattaaaaaagaagtttgacgatatc
ttctctgccaccaggtatactaaagctctggaggttattaagaaacttcacaaggatcaa
actcaggagataaagacatataagttgaaattggagaatctgcagaccttgaaagatgcg
gcttataagctccgggagtgcattgcccaagatcaagaaaggacggagtcttcgaaagtt
cagatggcggaactggagaccagcattcagaaagtggatgctgaagttcataataaggag
atgatgttgaaggatctgagaaagctacaggatcaaatatcaagaaaaactgctgaaagg
agcaccttatttaaggagcagcagaaacagtatgcagccttagctgaggaaaatgaagat
actgatgaagaattgaaagaatggaaaactaagtttgaagaaagaattgctattttggag
accaaaatccgcaaattggagagagagatggatgacacagaaactacaatatcttctctt
cagaatgcgaaaaccaactgtatgctagagatgagcaagcttcaaacagaggctgaagct
cacatgtctctgaagaatgaaagagatgctactatccagaaaatcttttcgcgtcacaat
ttggggactatccctagtttccccttcagtactgaggtcattttgaacctcacaaatcga
ataaaatcaaggctaagtgaaattgaggtggatttacaggacaagaagaaatcaaatgaa
acagcagtcagcaccacttgggatcgctatatggatgcaaatgaccgttggaaaagtgtt
gaagctcagaaacgagctaaagatgaaatcaagagtggcatattgaaacgcatagaagag
aaagaaattgagcgtgagacatttgaccttgaaatatctagtgtggatcttacacagatt
gatgaaagagaaaagaatgtgcaacttgagcttgaaagaaagacaaagcaacattctgaa
caggactttgaatccaaaatagagcagaagcagcatgaaatatacagcatagagcagaaa
attaagactcttaatcgagaaagagatgttatggctggtgatgctgaggatagagtgaaa
ttgtctttgaagaagacggaagtggagaatgtcaggaaaaaacacaaaaagataatagat
gactgcaaagataaaattagaggcatgctgaaggggagactgccagctgagaaggattta
aagaaggaaattgttcaagccttgaggtcaactgaaagggaatatgatgacctgagcttg
aaatcccgagaagcagaaaaagaggtcaacatgttacagatgaagatacaagaagtaaac
aatagtctatccaagcatcagaaagataaagaatcgagaaagagatacattgaatccaag
cttcaggttttgaatcaggaatcatataccattgatgcttatcccaaattgttggagtct
gccaaggaaagaagagatgtccagaaaagcaaatataacattgcagatggaatgcgacag
atgtttgatccttttgagcgagtggcccgtgcacatcatgtctgtccttgctgcgagcgc
cctttctctgcggaagaggaagatagcttcgttaagaagcaaagggtcaaggcttcaagc
tctgcagagcatgtcaaagtattggcctcagagtcatcaaatgctgactctgtttttcag
cagttggacaaacttcgctctgtatttgaagagtactctaaacttactaatgaaaccatc
cctctttgtgaaagaagcttaaaagagctcagagaagagctagagcagaaatctcaagcc
cttgatgatgtcttgggtatcttagctcaagtaaaagctgacaaggattcaatcgaagca
ttggtacaaccccttgataatgctgaaaggcttttccaagaaattcaaacctaccaaaag
caaattgaagatttggaatataagctggatttccgcggtcttggggttaaaactatggaa
gaaatccaatcagatttaagtagcctccaaagcacaaaggataaattgcatgatgagctg
gagaaattgagggatgaacagatttatatggaacgtgatctatcatgccttcaggccaga
tggcatgcactgagagaggagaagtctaaggttgctaatttgttacgtgatgttacaaag
acagatgaagagttagagcgtttggcggaggataaaagtcaaattgagctcgatatgaag
catttgagcgaggctcttggccccttatcaagggagaaagagaagttactgagtgactac
aatgccttgaaagttaagcttaatcaggagtatgaagaactagctgagaaaaagagaaac
taccaacaagaagttgaggcattactcaaggccaattctaagattaatgagtataatgat
ctgaagaaaggagagagattgaacggtattcaagaaaagcagcgggtctctgaatctcag
ctccagacatgccaagccaaaaaagacgaaatttcagcagaactgaacaaaagtaaagac
ttgatgcgaaatcaagatcatttaagaagaaatatagaggataatctgaattacaggaga
actaaggctgaagttgaggagcttacacgtgagattgagtcgctggaagagagcatactg
aaaattggtggggtttctgccgtcgaagctgaacttgtaaagttatcgcaggaaagagag
agacttctttcagagttgaaccgcggacgtgggactgtgtctgtttacgagagcaatatt
tcaaagaacagagtggaacttaaacagacgcagtacaaggacatagataagcggtacttt
gatcaactcatccagctaaagacaactgaaatggcaaacaaagacttggatagatactac
aatgcccttgacaaagcactgatgcgattccatacgatgaaaatggaggaaataaacaag
attataagggaactgtggcaacagacgtacagaggtcaagacatagattacataagaata
cattcagattcagagggtgcaggcactcgttcttacagctacaaggttcttatgcagacc
ggtgacacggaacttgagatgagaggacgatgcagtgctggtcaaaaggttcttgcttcc
ctgatcatacgattagctttggccgaaacattttgcctcaactgcggaatattggccctt
gatgagccgactacaaacttggatggcccaaactccgagtctctagcagcggccctcctc
agaattatggatgatagaaagggacaggaaaacttccaacttatagtcattacacacgac
gagcgtttcgctcaactcatcggacagcggcagcacgcagaaaaatattaccgcatctcg
aaagacgatctgcaacacagcataatcgaggcccaagatatattcaactga
DBGET
integrated database retrieval system
