KEGG   Thermococcus cleftensis: CL1_1197
Entry
CL1_1197          CDS       T02169                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
thm  Thermococcus cleftensis
Pathway
thm03030  DNA replication
thm03410  Base excision repair
thm03420  Nucleotide excision repair
thm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:thm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CL1_1197
   03410 Base excision repair
    CL1_1197
   03420 Nucleotide excision repair
    CL1_1197
   03430 Mismatch repair
    CL1_1197
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:thm03032]
    CL1_1197
   03400 DNA repair and recombination proteins [BR:thm03400]
    CL1_1197
Enzymes [BR:thm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CL1_1197
    6.5.1.6  DNA ligase (ATP or NAD+)
     CL1_1197
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CL1_1197
DNA replication proteins [BR:thm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CL1_1197
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CL1_1197
DNA repair and recombination proteins [BR:thm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CL1_1197
   NER (nucleotide excision repair)
    Other NER factors
     CL1_1197
   MMR (mismatch excision repair)
    Other MMR factors
     CL1_1197
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Tcp10_C
Other DBs
NCBI-ProteinID: AFL95400
UniProt: I3ZUL6
LinkDB
Position
1160296..1161975
AA seq 559 aa
MKYSELTELYRRLEKTTLKTLKTRFVAEFLRKTPDDVLEVVPYLILGKVFPDWDERELGV
GEKLLIKSVSIATGVSEREIENSVKDTGDLGESVALALKKKKQRSFFSQPLTIKRVYDTF
VKIAEAQGEGSQDRKMKYLANLFMDAKPEEGKYLARTVLGTMRTGVAEGILRDAIAEAFK
VKPELVERAYMLTSDFGHVAKIAKLEGNEGLSRVRIQVGKPIRPMLAQNAASVKEALAEM
GGKAAFEIKYDGARVQVHKDGDRVVIYSRRLENVTRSIPEIVRAVRESLKAEKAIVEGEL
VAVGEGGKPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDVLYVDGEGLIDTPFSERREK
LEEIISPGERIRLAEQLVTKSAEEAEAFYKKALELGHEGLMAKRLDSVYEPGNRGKKWLK
IKPTMEDLDLVIIGAEWGEGRRAHLLGSFLVAAFDPHSGEFVPVGKVGSGFTDEDLAEFT
KMLKPLIVREEGKYVEIEPKVVIQVTYQEIQRSPKYESGFALRFPRYVALREDKSPEEAD
TIERIAQLYEFQERFKAKR
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaaatactccgagctgacggagctgtacaggagactggagaagaccaccctcaagacc
ctcaagacccgctttgtggcggagttcctgaggaaaacgccggacgacgttcttgaggtc
gttccataccttatccttggcaaggtcttcccagactgggacgagagggagcttggtgta
ggtgagaagctcctcataaagtccgtttccatcgccaccggcgtctccgagagggaaatc
gagaactcagttaaggacaccggtgatctcggcgagagcgttgccctggccctgaaaaag
aaaaagcagaggagcttcttctcccagccgctgacgataaagcgcgtttacgacaccttc
gtcaaaatagccgaggcccagggggaggggagccaggacaggaagatgaagtatctggcc
aacctctttatggacgccaagccagaggagggtaagtatctggccagaaccgtcctggga
acaatgagaacaggcgtcgcggagggcatactgcgcgatgcgatagccgaggccttcaag
gtgaagcccgagcttgttgagcgggcctatatgctgacgagcgattttggccacgtggcc
aagatagcgaagctcgagggcaacgagggcctatccagggtcagaatccaggtgggcaag
cccataaggccgatgctggctcagaacgcggcgagcgtgaaggaagccctggcggaaatg
ggtgggaaggcggcgttcgagattaagtacgatggcgctcgcgttcaggttcacaaggat
ggcgatagggtcgtgatatactcccgtcggctggagaacgtcacccgctcgattccagag
atagtccgggcggtgagggagagcttaaaggccgaaaaggcgatagtggagggcgagctc
gttgccgtcggcgaaggtgggaagccgaggcccttccagtatgtcctgagaaggtttagg
aggaaatacaacatcgaggagatgatagagaaaatcccccttgagctgaacctcttcgac
gtcctctacgtcgatggtgaggggctgatagacacccccttctcggagcgcagggaaaag
ctggaggagataatttctccgggggagcggataaggctggcggagcagctggtcactaag
agcgccgaagaggcagaggcgttctacaagaaagccctggaactcggccacgaggggctg
atggccaaaaggctggattcggtttacgagcccggaaacaggggcaagaagtggctcaaa
ataaagcccacgatggaggatctcgatttggtcatcataggcgccgaatggggtgagggg
aggcgtgcccacctgctcggctccttcctcgtggctgctttcgacccgcacagcggtgag
ttcgtccctgttggaaaggtgggaagcggattcacggacgaggacctggcggagttcacg
aagatgctcaaacctctcatagttcgcgaggagggcaagtacgttgagatagagccaaag
gtcgttatccaggttacctaccaggagatacaaaggagcccgaagtacgagagcggcttt
gcccttcgcttcccgcgctacgtggccttaagagaagacaagagtccggaggaagcggac
accattgagaggatcgcccagctctacgagttccaggagaggttcaaggcgaagaggtga

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