Thiomicrorhabdus immobilis: THMIRHAM_16360
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Entry
THMIRHAM_16360 CDS
T08420
Symbol
ddlB
Name
(GenBank) D-alanine--D-alanine ligase B
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
tib
Thiomicrorhabdus immobilis
Pathway
tib00470
D-Amino acid metabolism
tib00550
Peptidoglycan biosynthesis
tib01100
Metabolic pathways
tib01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
tib00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
THMIRHAM_16360 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
THMIRHAM_16360 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
THMIRHAM_16360 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
tib01011
]
THMIRHAM_16360 (ddlB)
Enzymes [BR:
tib01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
THMIRHAM_16360 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
tib01011
]
Precursor biosynthesis
Amino acid ligase
THMIRHAM_16360 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_4
CPSase_L_D2
ATP-grasp_3
RimK
ATPgrasp_YheCD
TTL
EPL1
ATP-grasp
ATPgrasp_ST
Motif
Other DBs
NCBI-ProteinID:
BCN93851
LinkDB
All DBs
Position
complement(1815280..1816182)
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AA seq
300 aa
AA seq
DB search
MEFGKVAVLMGGKAAEREVSLRSGQAVTQAFIDQGINAVSEDVTSLEDLQRIAQEYDRAF
IALHGRWGEDGVVQAILDDLGLPYTGSGMAASAIAMDKLRTKWMWMGAGLPTPGFIWVSD
LMPLDISEFDLPFPVIVKPCHEGSSIGMRKVYDKPSLVEAVEYAQQFDSEILIEQWITGR
EYTCAVLNNTALPLIQLKTTHDFYDFDAKYKSNDTQYICPCDLTPEIEQELQQLVLQAFQ
VIGSKAWGRVDFMLDEDDQAWLIELNSVPGMTDHSLVPMAAKAKGIAFEQLVVEILKTTL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggaatttggtaaggttgccgtgttaatggggggcaaagccgctgaaagagaggtttct
ttacgcagtggacaagccgttacccaagcctttattgaccaaggcataaatgccgtttct
gaagatgtcacctcgctggaagatttgcagcgtatcgcccaagaatatgaccgagctttt
atcgccctgcatggccgttggggtgaagacggtgtggttcaagcgattttagatgattta
ggtttaccttataccggaagcggtatggcggcctcagcaattgctatggataagcttaga
accaaatggatgtggatgggggctggcttgccaactcctgggtttatttgggtgtcggat
ttgatgccgttggatatcagtgagtttgatctgccttttccggtgatagtaaaaccttgt
catgagggttcgagtatcggcatgcgtaaagtgtatgacaagcctagcttggttgaagcg
gttgagtatgctcagcaatttgattccgagatattaattgaacaatggattaccgggcgt
gaatacacgtgtgcggttttaaataacaccgccttgccattgattcagttgaaaaccacg
catgatttttatgattttgacgctaaatacaaatccaatgacacacagtatatttgtcct
tgtgatttaactcctgaaatagaacaagagttacaacagcttgttttgcaagctttccaa
gtgattggttccaaggcttgggggcgggtggatttcatgttggatgaggatgaccaggcc
tggttgattgagttgaattccgtgccgggcatgaccgaccatagtttggtacctatggcc
gctaaggccaaaggcatcgcttttgagcaattagtggttgagattttaaaaaccacactt
taa
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