Thermodesulfatator indicus: Thein_1426
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Entry
Thein_1426 CDS
T01546
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tid
Thermodesulfatator indicus
Pathway
tid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Thein_1426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tid03400
]
Thein_1426
Enzymes [BR:
tid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Thein_1426
DNA repair and recombination proteins [BR:
tid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Thein_1426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEH45292
UniProt:
F8AA06
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All DBs
Position
1499112..1500020
Genome browser
AA seq
302 aa
AA seq
DB search
MLPAYIKPMLAKLSSPFDSPRFLYEIKWDGTRCLIFIENGKVRLQNRRLNDITYRYPEFW
DLPKLVPGDGIIFDGEIVVLKDGRPEFRLLQEREHVKSPLKIKMLSERLPATYMAFDLLY
FEGKPILDKPLRERKALLKELLPESPFVAESQYILEKGVAFFEQVVAQGFEGVMAKDLES
PYLPGKRVDFWLKFKPRGKRTCVIVGYLLRPDGTLKSLLIAEPTEKGLVYRGKVASGLNT
HLSAELLIRLKGLEDKKPENLKGRGFPKGARWVKPEIYCEVSFQEITNHGQFRAPVLEKV
FL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgttaccggcttatattaagcccatgctggccaagctctcaagcccctttgattcccca
cgctttctttacgaaatcaagtgggacggcacaaggtgccttattttcatagaaaacgga
aaggtgcgtttgcaaaaccgccgccttaacgacattacctatcgctacccggagttctgg
gacctaccaaagctcgttcccggtgacgggattatttttgacggcgaaatcgtggtctta
aaagacggccggcctgaatttcgcctgttacaggaaagagaacacgtaaagagtccgctg
aaaatcaaaatgctctccgagcgtctgcccgccacctacatggcctttgacctgctttac
tttgaaggaaagcctattttggataagcctttgcgtgagcgcaaggccctcttgaaagaa
ctgcttcccgaaagtccttttgtggcggagtctcagtatattctggaaaagggtgtggcc
ttttttgaacaagtggtagcccagggttttgaaggggttatggccaaggacttagaaagc
ccgtatcttccgggcaaaagggttgacttctggctcaagttcaagccccgcggaaaaaga
acctgcgtcatcgtgggctatttgttgcggccagacggcacgctaaaaagccttttgata
gctgagcccacagaaaaagggcttgtctatcgcggaaaagtggccagcggcttaaacact
catctttcggcggagcttttaatacggcttaaagggcttgaagataaaaagccggaaaat
ttaaagggaagagggttccccaaaggggcccgctgggtaaagccggagatttactgtgaa
gtttcttttcaggagataaccaaccacggccagtttcgggccccggtgcttgaaaaagta
tttctataa
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