Thalassospira indica: DY252_00610
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Entry
DY252_00610 CDS
T05581
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tii
Thalassospira indica
Pathway
tii03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DY252_00610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tii03400
]
DY252_00610
Enzymes [BR:
tii01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DY252_00610
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DY252_00610
DNA repair and recombination proteins [BR:
tii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DY252_00610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AXO12918
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All DBs
Position
complement(132507..133346)
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AA seq
279 aa
AA seq
DB search
MPELPEVETVTRGLTPVMEGRVVNHVVQRRANLRFPFPEGFVDRMAGRTINQLTRRAKYI
LGYLDDGQVLLIHLGMSGRMTIHNDPTVEVPEAGKHDHVDFVMADGAVVRFNDPRRFGVI
TLIAGDEVASHKMLAGIGPEPLGNAFNADVLAAGIAKRASPIKTVLLDQKLVAGLGNIYV
CEALFRSGIAPDRLAKDLKPGEIERLYREIRLVLEDAIAAGGSSLKDYRQSNGELGYFQH
NFRVYGREGETCIADGCDSTIARIVQAGRSTFFCPTCQK
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgccagaggtcgaaacagtcacccgtggtctgacacccgtcatggaagga
cgggtggtcaatcatgtggtgcagcgacgtgcgaacctgcgctttcccttcccggagggg
tttgttgatcgcatggccgggcgcaccatcaatcagctgacccggcgggcaaaatacatt
ctgggctaccttgatgacgggcaggtgctgctgatccatcttggcatgtctggtcgcatg
accattcacaatgatccgaccgtcgaagtgcccgaagccggcaagcatgaccatgtcgat
tttgtcatggccgatggggccgttgtgcggttcaacgatccgcggcgctttggtgtcatc
accctgatcgcgggcgacgaggtcgcaagccacaaaatgctggccggtatcgggcctgag
ccgcttggcaatgcgtttaatgctgatgtgctggcggcgggaatcgccaaacgggcaagc
ccgatcaagaccgtattgctggatcagaaactggtggctggtcttggcaatatctatgtc
tgcgaagccctgttccgatcaggcatcgcgccggaccgtctggccaaggatctcaaaccc
ggcgagatcgaacggttgtatcgcgaaatccgtctggtgcttgaagatgcgattgctgct
ggtggttcaagccttaaggactaccgccaaagcaatggcgagcttggctatttccagcac
aatttccgtgtctatggtcgcgaaggcgaaacctgcatcgccgatggctgcgacagcacc
atcgcgcgcatcgtacaggccggccggtcgaccttcttctgtccaacctgtcagaaataa
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