Thermococcus kodakarensis: TK1252
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Entry
TK1252 CDS
T00226
Name
(GenBank) ssDNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tko
Thermococcus kodakarensis
Pathway
tko03410
Base excision repair
tko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TK1252
03430 Mismatch repair
TK1252
03440 Homologous recombination
TK1252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tko03400
]
TK1252
DNA repair and recombination proteins [BR:
tko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TK1252
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TK1252
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TK1252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
BAD85441
UniProt:
Q5JGL0
Structure
PDB
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All DBs
Position
1096815..1098248
Genome browser
AA seq
477 aa
AA seq
DB search
MDKEAFLERVREGAELIKMHIELGHTIRLISHRDADGITAGAILAKAVAREGGTFQLSIV
KQVSEELIDQLAREKREIYVFSDLGSGSIELIEEKLNFATVVVADHHPPEKDSFSTDSHV
LVNPVPFGANSVRDLSGSGVAYFVAREMNRKNRDMAYVAIVGAVGDMQEIDGTFHGLNLE
IIEDGKELGILEVRKELRLFGRESRPLYQMLAYATNPEIPEITGDERKAIEWLRAKGFDP
EMKYWQLREEEKRKLHEALLVHMIKHGAPKEAIDRLIGDVVISPLYPEGDVRHEAREFAT
LLNATGRLNAGTLGVAICLGDEEAYKVARKMLDDYKKEQIEARKFIIQNWNMVEEGEHAY
VFYAGKNIRDTLVGIAANMAINAGLADPEKPVVVLADSDEDENLVKGSARTTEKALEKGY
HLGEALKEVAEKLGGEGGGHAIAAGIRFPKNRIDEFIKLFNEALGRQVKGGGSEGEG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtggataaggaggcttttttggagcgcgttagggaaggggccgagctaattaagatgcat
atcgagttaggtcacacgataaggctcatctcccacagggacgctgacggcatcacggca
ggtgcgattcttgcgaaggccgttgcgagggaagggggaaccttccagctcagcatcgtc
aagcaggtgagcgaggagcttatagaccagctggcgagggaaaagagagaaatctacgtt
ttcagcgacctcggaagcggctcaattgaactcatcgaagaaaagctgaactttgccacc
gtcgtcgttgccgaccaccacccacccgagaaggactcgttctcaacggactcccacgtc
cttgttaatccggttccattcggagcaaacagcgttagggacttgagcggctctggggtg
gcctacttcgtcgcaagggagatgaacagaaagaacagggacatggcctacgtagccatc
gtcggcgccgttggggatatgcaggagatagacgggacttttcacggactcaaccttgaa
atcatagaggacggaaaggagctgggtattctcgaagtcaggaaagaactcaggctcttt
ggaagggagagcaggccgctctatcagatgctcgcctacgctaccaatcctgaaatcccg
gagataacgggagacgagaggaaggcaatagaatggctccgcgccaaaggctttgaccct
gaaatgaagtactggcagctgagggaagaggaaaagagaaagctccacgaggccctcctc
gtccacatgataaagcacggagcaccgaaggaagcaatagacaggctcattggtgacgtt
gtcataagcccgctctaccctgagggggacgtaagacatgaggcgagggagttcgcaacg
ctcctcaacgccacaggaaggctgaacgccggaacgctgggagttgctatctgcctgggc
gacgaggaagcctacaaagttgccagaaagatgctcgacgactacaaaaaagagcagata
gaggcgaggaagttcataatccagaactggaacatggtcgaagagggggagcacgcctac
gtcttttacgctggcaagaacatacgggacactctcgttggaatagcagccaacatggcc
atcaacgcgggtctggctgacccagagaaacccgtggtagttctagccgacagcgacgag
gacgagaacctggtaaaaggctctgccagaaccacggagaaggcactggagaagggctac
caccttggggaagcgttgaaagaggttgccgaaaaacttggcggcgagggcggtggacac
gccatagccgcgggcatacgcttcccgaagaacaggatagacgagttcattaagctcttc
aacgaagccctcgggaggcaggtgaagggcggtggaagtgaaggcgagggttga
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