Tessaracoccus lapidicaptus: TLA_TLA_00044
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Entry
TLA_TLA_00044 CDS
T06975
Symbol
ligD_1
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tla
Tessaracoccus lapidicaptus
Pathway
tla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TLA_TLA_00044 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tla03400
]
TLA_TLA_00044 (ligD_1)
Enzymes [BR:
tla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TLA_TLA_00044 (ligD_1)
DNA repair and recombination proteins [BR:
tla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TLA_TLA_00044 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
VEP38553
UniProt:
A0A1C0AK10
LinkDB
All DBs
Position
1:complement(41698..42639)
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AA seq
313 aa
AA seq
DB search
MSERIATRIDGLTLTLSNLDKPLFPSGFTKGELISYYVGVADAMLPHLRDRAVTRVRCPD
GTAGPSFYEKNVPPGAPDWVDTVDVATSAGTVTYVTAHRTADLVWLANLAAVELHTPQWL
IHDATDSPDGLLLSGEHEPRATTLIVDLDPGPGITPADSARAAIRAATVLAEVGLVAHPK
TSGNKGIQLTVPIQPTPASVVHAFATALAQHLARSHPSMYVATMSKEARANLVFVDYGQN
LAARNTVTAYSVRGLDEPSVATPLTWDEVAALRPDSVLRTSPTQALDRVQRLGDLWAATL
PTAASPSLPSPDF
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacggatcgccacccggatcgacgggttgacgctcaccctgagcaatctcgac
aagcccctcttcccgtccgggttcaccaagggggaactcatctcctactacgtcggcgtc
gccgacgcgatgctcccgcacctccgggaccgcgccgtgacccgggtccgctgccccgac
ggcacggccggcccctccttctacgagaagaacgtgccccccggcgcccccgactgggtc
gacaccgtggacgtggccacgtcggccggcaccgtcacctacgtgactgcccaccgcacg
gccgacctcgtgtggctcgcgaacctcgccgcggtcgagctgcacaccccgcagtggctc
atccacgacgccaccgactctcccgacgggctgctgctctccggcgagcacgagccccgc
gccaccacgttgatcgtggacctggatccgggtccggggatcacgcccgcagactccgcc
agggccgcgatcagagccgcgacggtgctggccgaggtgggcctcgtggcgcatcccaag
acgtcgggcaacaagggcatccagctgaccgtgcccatccagcccacccccgcgagcgtc
gtgcacgcgttcgccaccgccctcgcccagcacctggcccgcagccacccctcgatgtac
gtcgcgacgatgagcaaggaggcccgtgccaacctggtcttcgtcgactacgggcagaac
ctcgcggcgcgcaacacggtgacggcgtattcggtgcgcggcctggatgagccgtcggtg
gcgacgccgctgacctgggacgaggtggccgcgctgcgtcccgattcggtgctgcgcacc
agtcccacgcaggcgctggaccgggtccagcgcctgggagatctgtgggcggcgacgctg
ccgacggccgcctcaccgtcgctgccgtcccccgacttctga
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