KEGG   Thermococcus litoralis: OCC_10130
Entry
OCC_10130         CDS       T02800                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tlt  Thermococcus litoralis
Pathway
tlt03030  DNA replication
tlt03410  Base excision repair
tlt03420  Nucleotide excision repair
tlt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tlt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OCC_10130
   03410 Base excision repair
    OCC_10130
   03420 Nucleotide excision repair
    OCC_10130
   03430 Mismatch repair
    OCC_10130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tlt03032]
    OCC_10130
   03400 DNA repair and recombination proteins [BR:tlt03400]
    OCC_10130
Enzymes [BR:tlt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OCC_10130
    6.5.1.6  DNA ligase (ATP or NAD+)
     OCC_10130
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     OCC_10130
DNA replication proteins [BR:tlt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    OCC_10130
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     OCC_10130
DNA repair and recombination proteins [BR:tlt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     OCC_10130
   NER (nucleotide excision repair)
    Other NER factors
     OCC_10130
   MMR (mismatch excision repair)
    Other MMR factors
     OCC_10130
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase FeS_assembly_P Tcp10_C TPR_1
Other DBs
NCBI-ProteinID: EHR78639
UniProt: H3ZN22
LinkDB
Position
1986204..1987886
AA seq 560 aa
MLYKELAELYKRLEKTTLKTLKTKFVADFLKKVEDPELLEIVPYLILGKVFPDWDERELG
VGEKLLIRAVSMATGINSDEIENSVKDTGDLGESVALALQRRKQKSFFSQPLTIKRVYST
LVKVAETTGEGSQDRKLKYLANLFMDASPEEGKYLARTILGTMRTGVAEGLLRDAIAEAF
RVKVELVERAYMLTSDFGFVAKVAKLEGDEGLLKVKIQVGKPIKPMLAQMVANVREALIE
MGGEAEFEIKYDGARVQVHKDGEKVIVYSRRLENVTRSIPEVVERIKESLKPEKVIVEGE
LVAVGEEGRPRPFQYVLRRFRRKYNIDEMIEKIPLELNLFDVLYVDGKSMIDVQFIERRK
TLEGIVTTNEWIKIAENLITKNPEEAEEFYHRALDLGHEGLMAKRLDSVYELGNRGKKWL
KIKPTMENLDLVIIGAEWGEGRRSGVLSSFLLGAYDPIRGDFVPVGKVGSGFTDEDLIEF
TKMLKPLIKKEHGKFVEIEPKIVIEVAYQEIQKSPKYESGFALRFPRYVALREDKGPEDA
DTLQRIAELYQLQERMKGGK
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgctatacaaagagcttgctgaactgtataaaagacttgaaaaaacaaccctaaagacc
cttaagacaaaatttgtagcggactttttaaagaaagttgaagacccagagctgttggaa
attgttccctatttaatccttggaaaggtctttccggattgggacgagagagagcttggc
gtaggtgagaagctattgataagagccgtttctatggccactggaataaatagtgacgag
atagaaaattccgtaaaagatactggagatttgggggaaagtgttgcactcgctcttcaa
aggaggaagcaaaaaagctttttctcccagccgcttacaataaaaagggtttacagcact
ttagttaaagttgccgaaaccactggcgaaggaagtcaagatagaaagctgaaatacctc
gccaatctcttcatggatgcttctccagaggaagggaagtatttggcaaggacgatactt
gggactatgaggacgggagttgcggagggactgctgagggatgcaatagcagaggcgttt
agggtaaaggttgagcttgttgagagggcttacatgcttacaagtgacttcgggtttgtg
gctaaagtagcaaagcttgagggagacgaggggcttttgaaagtaaaaatccaagtaggg
aagccaattaagccgatgctcgcccagatggtagccaacgttagagaggccttgatagaa
atgggtggagaggcggagtttgagattaaatatgatggtgcgagggttcaggttcacaag
gacggagagaaggttatcgtttattcaaggcgtcttgaaaatgtcacgagatcaatccca
gaggtcgttgagaggattaaagagtctctaaagccagagaaagttatcgtagagggcgaa
cttgttgccgttggagaggaaggaagaccgagaccgttccagtacgtgctgaggagattt
agaaggaagtacaacatagatgagatgattgaaaaaatacccctcgagctcaaccttttc
gatgttctttacgttgatggcaaaagcatgatagacgttcagttcatagagaggaggaaa
acccttgagggcattgtgaccacaaacgaatggataaaaatcgctgagaatttgataaca
aagaatccagaagaggccgaggagttctatcacagagcccttgacctaggtcatgaagga
ctaatggcaaaaaggctcgactcagtttacgagctcggtaacagaggaaagaagtggctg
aagattaagccaacaatggagaatctcgatttagttattataggcgcggaatggggcgaa
gggaggagaagtggagtcttgagctcgttccttttaggtgcatacgatcccataagggga
gattttgtcccggttggtaaagtcgggagcggatttactgatgaagacctaatagagttc
acaaagatgcttaagcccttgataaaaaaggaacacggcaagttcgttgaaatagagcct
aagatcgtgatcgaagtggcttatcaggagattcagaagagccccaagtacgagagcggc
tttgcattaaggttcccgagatacgttgcgctaagagaggataaaggaccggaggatgca
gataccttacagaggatagccgagctttatcaattgcaggagaggatgaaggggggcaag
tga

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