Thioflavicoccus mobilis: Thimo_2142
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Entry
Thimo_2142 CDS
T02397
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thimo_2142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmb03400
]
Thimo_2142
DNA repair and recombination proteins [BR:
tmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thimo_2142
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Thimo_2142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_16
AAA_29
AAA_21
SMC_N
nSTAND1
ATPase
NACHT
AAA_18
AAA_33
AAA_25
RsgA_GTPase
AAA_22
Viral_helicase1
UvrA_DNA-bind
nSTAND3
AAA_23
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AGA90893
UniProt:
L0GVU4
LinkDB
All DBs
Position
2362774..2368341
Genome browser
AA seq
1855 aa
AA seq
DB search
MPDDHPAIRLRGVRQNNLKNLDLDLPLGELIVVTGVSGSGKSSLAFDTLYAEGQRRYVET
FSPYARQFLDRLDRPRADAVDGVPPAIAIDQTNPVRTSRSTVGTMTELNDHLKLLFARAA
RLYCHGCGREVRRDTPESIWTDLLARTEGKAPRCLIVFRVAVPASLDTQSVKEMLAQQGY
VRLLGEDASGIAVIQDRLALRLDNQGRAIEALEVALQKGHGRVLVYPVDADRRPGEPWRY
SSDLHCPDCDLDYRSPTPSLFSFNSAVGACPTCRGFGRTIGIDWDQVIPDPGKTLLEGAV
KPFQSDSYSESQEDLIGFANRRGVPVDVPWRDLPDADRRWVIDGEGDWDAGVWYGVRRFF
AWLEGRAYKMHVRVLLSRYRAYDECPTCQGARLKDEALDWRIGSAALAERTLPAAQRFRH
ARVTMPSAAWAALPGLGLHDLLCLPIAACRAFFDALRLEGAMDQALELLLTGIRSRLRYL
DTVGLGYLTLDRQSRTLSGGEVQRINLTTALGTALVNTLFVLDEPSIGLHPRDMDRVIAV
LERLRDQGNSLVVVEHDPQVMRAADRILDLGPGPGERGGEICFAGPPATLIATHGSLTGD
YLAGRRRVAEPQPPRPFRPDEPSLQVRGASAHNLKGLDVTIPLGRLVCVTGVSGSGKSTL
VQEVLYRGLARLKGHPDGTPGAHEAIDGHEAIGDVNLLDQSGIGRTARSCPASFVGALDP
LRRRFAQTPLARERGYKAGTFSFNSGDGRCPTCGGNGFEHVEMQFLSDVYLRCPDCDGRR
YRPAVLEVRLPGPPDDATDAPGPSIADVLDWTVDEALARFADDADLTHALGPLAAVGLGY
LRLGQPVPTLSGGEAQRLKLAGHLAKTGRRRRARGQLFLLDEPTTGLHFADIAVLLQALR
RLLADGHSLVVIEHNLDVIAAADWLIDLGPEGGAGGGALVCAGSPAEVAAHPISHTGRAL
AALADAPPDEVPPARVAEPPAGGLRPSQILIHHAREHNLKDLTLAIPRDRLTVITGVSGS
GKSTLAFDILFAEGQRRYLESLNAYARQFVQPAARADVDAIFGIPPTVAIAQRTSRGGLK
STVATLTEIHHYLRLLFVKLGTQYCPDCAVPIEPQPPAALLERVLREQAGRRVMLFAPLV
VARKGLYNEQAAEAARQGYDWLRVDGVRRPTEPWPRLDRFREHSIDLPVGELLVEARAEP
ALRALLDEALRLGDGLVRVATVVGEGWDAETAYSTERACPACGRAFPEPDPRLFSYNSKH
GWCPSCFGTGTHLAGFDAEQTGEETQWFDSAVGLEKSCPACQGRRLRPEALAVRFHGRSI
ADYGALSVDAAADAFAALTLTEREAAIAADLLAEVRHRLAFLAEVGLGYLTLERAAPTLS
GGEAQRLRLAAQLGSSLQGVCYVLDEPTIGLHPRDNRLLLDTLARLSGRGNTVVVVEHDE
ETIRRADHVIDLGPGAGARGGQLIAQGTCADLLADPNSVTGHFLRQPPRRTQPPRPAPSR
EHWLAIRGACAHSLKDLSVQIPLGRLVCITGVSGSGKSTLVHDVLLKSLRALLDAERPGN
GRARRDELHGCAGLTGWQGLARVLEVDQTPIGLTPRSCPATYVGFWDAIRRLFAAAPEAR
LRGWGPARFSFNTGAGRCPVCEGQGVQRLEMSFLPDVKVPCEACGGRRFTAETCEVRYLG
RDIAQVLVMGVDEAVEVFAAHPRVHHALRLLQDVGLGYLTLGQPSPTLSGGEAQRLKLVT
ELAKARPATGRAIAKPTLYLLDEPTVGLHMADVERLIAVLHRLVDAGHSVLVIEHNLDLI
AAADWILDLGPEGGNAGGQLVAEGPPERIAATGDLPTAAALRQHLQRHQQGGVIP
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacgaccaccccgccatccgcctgcgcggcgtgcgacagaacaacctgaagaac
ctggatctggacctgccgctcggcgagctgatcgtcgtcaccggggtgtccggctcgggc
aagtcgtcgctcgccttcgacaccctctacgccgagggccaacgccgctacgtcgagacc
ttctcaccctacgcccgccagttcctcgaccgcctcgaccgaccgcgcgccgacgcggtc
gacggcgtcccgccggcgatcgcgatcgaccagaccaacccggtgcgcacgtcgcgctcg
acggtcgggaccatgaccgaactgaacgaccacctgaagctcctcttcgcccgtgccgcc
cgcctctactgccacggctgcgggcgcgaggtgcgccgcgacacccccgaatcgatctgg
acggacctgctcgcgcgcaccgaaggcaaggcgccgcgttgcctgatcgtgttccgcgtc
gcggtaccggccagcctcgacacgcaatcggtaaaggagatgctcgcccagcagggctac
gtccgcctactcggcgaggacgcgagcggcatcgccgtcatccaagaccggctcgcgcta
cgcctggacaaccagggccgcgccatcgaggccctcgaggtcgcgttgcagaagggccac
ggccgggtcctggtctatccggtcgacgccgaccgccggccgggcgagccctggcgctac
tccagcgacctgcattgccccgactgcgacctggattatcgctcgccgacgccgagcctg
ttctcgttcaactccgcggtcggcgcctgcccgacctgccgcggcttcggccgcacgatc
ggcatcgactgggaccaggtcatccccgatccgggcaagacgctgctggagggtgccgtc
aagccgttccagtcggacagctactcggagagccaggaggacctgatcggcttcgcgaac
cgccgcggcgtgccggtcgacgtgccctggcgcgacctaccggacgccgaccggcgctgg
gtcatcgacggcgagggcgactgggacgccggcgtctggtacggcgtacggcgcttcttc
gcctggctcgagggccgcgcctacaagatgcacgtgcgggtgctgctgtcgcgctaccgc
gcctatgacgagtgcccgacctgccagggcgcccggctcaaagacgaggccctcgactgg
cggatcggctcggcggcgctcgccgagcgcacgctgcccgccgcgcagcgcttccgccac
gcccgcgtgaccatgccgtcggccgcctgggcggccctgcccgggctcggcctgcacgat
ctcctctgcctgccgatcgccgcctgccgcgccttcttcgacgcgctgcgcctcgagggc
gcgatggaccaggccctcgagctgctgctcaccggcattcgttcgcggctgcgttatctc
gatacggtcggcctcggctacctgaccctcgatcgccagtcgcgcaccctctcgggcggc
gaggtccagcggatcaacctgaccacggcgctcggcaccgcgctggtgaacaccctcttc
gtcctcgacgagccaagcatcggcctgcacccgcgcgacatggaccgggtcatcgccgtc
ctcgagcgactgcgcgaccagggcaattcgcttgtcgtcgtcgagcacgacccgcaggtc
atgcgcgccgccgatcgcatcctggatctggggcccggcccgggcgagcgcggcggcgaa
atctgcttcgcaggtccgccggcgacactgatcgcgacgcacggctcgctgaccggcgac
tacctggccggccgccggcgggtcgccgagccgcagccgccccgccccttccggcccgac
gagccgagtctccaggtccgcggggcgagcgcgcacaacctgaagggcctcgacgtcacg
atcccgctcgggcggcttgtctgcgtcaccggcgtctcgggctcgggcaagtcgacactg
gtccaggaggtcctttaccgcggcctggcccggctcaagggtcacccggacggcacgccc
ggcgcccacgaggcgatcgacggccacgaggcgatcggcgacgtgaacctgctcgatcag
tccggtatcggccgcaccgcccgctcgtgcccggcgagcttcgtcggcgccctcgacccg
ctacgccgacgcttcgcccaaacgcccctcgcccgcgagcgtggctacaaggccggcacc
ttcagcttcaactcgggcgacgggcgctgcccgacctgcggcggcaatggcttcgagcat
gtcgagatgcagttcctctccgacgtctacctgcgctgcccggactgcgacgggcggcgc
taccgcccggccgtcctcgaggtgcgcctgcccggccccccggatgacgccaccgacgcg
cccggcccgtcgatcgccgacgtgctcgactggaccgtcgacgaggccctggcccgcttc
gccgacgacgcggacctcacccacgcgctgggaccgctcgccgccgttggcctcggctac
ctgcgcctcggccagccggtgccaaccctgtccggcggcgaggcccagcgcctcaagctc
gccggccacctggccaagaccggccgccggcggcgcgcccgcggccagctcttcctgctc
gacgagccgaccacggggctgcacttcgccgacatcgcggtactgctccaggccctgcgg
cggctgctcgccgacggccactcgctggtcgtcatcgagcacaacctggacgtcatcgcc
gccgccgactggctgatcgacctggggcccgaaggcggtgccggcggcggcgcgctggtc
tgcgccggctcgccggccgaggtcgccgcccacccgatcagccacaccggccgggccctc
gcggccctcgccgacgcgccccccgacgaggtcccgccggcgcgggtcgccgagcccccg
gccggggggctgcggccgtcgcagatcctgattcaccacgcccgcgagcacaatctgaag
gacctgacgctggcgatcccgcgcgaccggctgaccgtcatcaccggcgtctccggcagc
ggcaagagcacgctggccttcgacatcctcttcgccgagggccagcggcgctacctcgag
tcgctgaacgcctacgcccgccagttcgtgcagccggccgcgcgcgccgacgtcgacgcc
atcttcggcatcccgccgacggtcgcgatcgcccagcgcacgagccgcggggggctgaag
agcacggtcgccaccctaaccgagatccaccactacctgcgcctgctgttcgtcaagctc
ggcacccaatattgcccggactgcgcggtcccgatcgagccacagccgcccgccgcgcta
ctggagcgggtcctgcgcgagcaggccggccgccgcgtcatgctgttcgccccgctcgtc
gtcgcccgcaaggggctctacaacgagcaggccgccgaggccgcgcgccagggctacgac
tggctgcgggtcgacggcgtgcgccggccgaccgagccctggccgcggctcgaccgcttt
cgcgagcactcgatcgacctaccggtcggcgagctcctggtcgaggcccgcgccgagccg
gcgctgcgcgcgttgctcgacgaggcgctcaggctcggcgacggcctggtgcgggtcgcg
accgtcgtgggcgagggctgggacgccgagaccgcctactcgaccgagcgcgcctgccct
gcctgcgggcgcgccttcccggagcccgatccgcgcctcttcagctacaactcgaagcac
ggctggtgcccgagctgcttcggcaccggcacccacctcgccggcttcgacgccgagcag
accggcgaagagacccagtggttcgactcggccgtcggtctggaaaagtcctgccccgcc
tgccagggccggcggctgcgccccgaggccctcgcggtgcgtttccacggccgctcgatc
gccgactacggcgccctctcggtcgacgccgcggccgatgccttcgccgcgctgacgctg
accgagcgcgaggcggcgatcgccgccgacctgctcgccgaggtccgccaccggctcgcc
ttcctcgccgaggtcggcctcggctacctgacgctcgagcgcgccgcgccgaccctctcc
ggcggcgaggcccagcggctgcgcctcgccgcccagctcggctcgagcctgcaaggggtc
tgctacgtcctcgatgagccgacgatcggtctgcacccgcgcgacaaccgcctgctactc
gacaccctcgctcgcctgagcgggcgcggcaacacggtcgtcgtcgtcgagcacgacgag
gaaacgatccgccgcgccgaccacgtcatcgacctcggtccgggcgccggcgcgcggggc
ggccagctgatcgcccaggggacctgtgccgacctgctcgccgatccgaactcggtgacg
ggccacttcctgcgccagcccccgcgccgcacccaaccgccgcgcccggcgccaagccgc
gagcactggctcgccattcgcggcgcctgcgctcacagcctaaaggacctgagcgtccag
atcccgctcgggcggctggtctgcatcaccggcgtctcgggctcgggcaagtcgactttg
gtccacgacgtactgctcaagagcctgcgggcgctcctcgatgccgagcgcccggggaac
gggcgggcgcgccgcgacgagctacacggctgcgccggactcaccggctggcagggcctc
gcccgggtcctggaagtcgaccagaccccgatcggcctgacgccgcgctcgtgcccggcg
acctacgtcggcttctgggatgcgatccgccgcctcttcgccgccgcccccgaggcccgg
ctgcgcggctggggcccggcgcgcttctcgttcaacacgggcgcggggcgctgcccggtc
tgcgaaggccagggcgtgcagcgcctggagatgagcttcctgcccgatgtgaaggtcccg
tgcgaggcctgcggcgggcgccgcttcaccgccgagacctgcgaggtgcgttacctcggc
cgcgacatcgcccaagtcctggtgatgggcgtcgacgaggcggtcgaggtcttcgccgcc
catccgcgcgtccaccacgcgctgcggctgctgcaagacgtcggcctcggctacctgacc
ctcggccaaccgagcccgaccctctccggcggcgaggcgcagcgcctcaagctcgtcacc
gagctggccaaggcccgcccggcgaccggccgcgcgatcgccaaaccgaccctctatctg
ctcgacgaaccaaccgtcggcctgcacatggccgacgtcgagcgcctcatcgccgtcctg
caccgcctcgtcgacgccggccactcggtgctcgtcatcgaacacaacctggatctcatc
gcggccgccgactggatcctggacctcggccccgaaggcggcaacgctggcggccagctc
gtcgccgaaggcccgccggaacgcatcgctgccaccggcgacctgccgaccgcggcggcg
ctgcggcagcatttgcagcgacaccaacaaggcggagtaattccatga
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