Legionella micdadei: LMI_2571
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Entry
LMI_2571 CDS
T03810
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tmc
Legionella micdadei
Pathway
tmc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LMI_2571 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmc03400
]
LMI_2571 (ligD)
Enzymes [BR:
tmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LMI_2571 (ligD)
DNA repair and recombination proteins [BR:
tmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LMI_2571 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
CEG61832
UniProt:
A0A098GIL1
LinkDB
All DBs
Position
I:complement(2690528..2692996)
Genome browser
AA seq
822 aa
AA seq
DB search
MSLESYRQKRDFKKTPEPKGHVHKTKHFLFVVQKHAATHLHYDFRLELKGVLKSWAVPKG
PCLDPKVKRLAIHVEDHPIEYGTFEGIIPKEEYGGGTVMLWDQGHWVPLDDDPEEAYHQG
HLRFELNGKKIQGRWDLIRFKQNQWFLIKYDDEFAKSFSEYDVTKEEPRSVLNDQSIEEI
SRNYQGVWSKNKANPRADFIDPELKASLQTSPFLKTISAQLATLVDKPPKGDNWLHEIKF
DGYRMVAFKKGDKIRFVSRNQKDWTTEFHQLIPDLQKLPVENGIFDGEIVALDERSRSNF
QLLQNSIKSEKQSSLFYYIFDLLYLEQYDLRSLPLIERKKILTTILEEAPLSIKYSDHVV
GQGEAMFKHSCDFALEGIVSKRADSRYLGKRSKSWLKIKCSKRQEFVVGGFTKPKGSRKH
FGSLYLGVFNEDKELVFIGNVGTGFTDKSLEEIYNELKPLEIKKNPFNEFPPEAKTATWV
KPKLIVEVEFSEWTDEGRLRHPSFKGLRTDKKAQEVIKEKERSLESIESEPPAMMGNPQK
LSSPEKILYKEDKISKQDLYDYYDKISDYILPYILNRPLTLVRCPNNYKECFYQKHLNKG
LTKLHEVPVKNKKGEVEQYLYLDNKEGLLNLVQMGVLEIHPWGSTINHLEHPDILIFDLD
PAPDVEWKMVVEAAFDIREQLQQYELTSFVKTTGGKGLHIVIPVKAEYDWDEVKNFTRVF
VEFLEKRNPEKYISKMTKAKRKGKIFIDYLRNQRDATAIAPYSTRARIHAPIATPIRWDE
LSEQYEDTFYTIRTVLKRLQALKTDPWRGFWTLSQSLRLNEL
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgagcctagagagctatcgacaaaaaagggattttaaaaaaacgccagagcccaaaggg
catgtgcataaaaccaaacattttctttttgttgttcaaaaacatgctgcaacccacctt
cattatgattttcgtttagagcttaaaggcgtccttaaaagttgggctgtacctaaaggg
ccttgtcttgaccctaaggtaaagcggctcgcaatccatgttgaagatcatcctattgaa
tatggcacttttgaagggattattcctaaagaggagtatggaggaggaacagtaatgctt
tgggatcaagggcattgggttccgctggatgatgatccggaagaggcctatcaccaaggc
catcttcgttttgaactcaacggtaaaaaaatacaagggcgttgggatctaattcgtttt
aaacaaaatcaatggttcctcattaaatatgatgatgaatttgccaagtccttctcagag
tatgatgttacgaaagaagaaccccgaagtgttctaaatgatcaatcaatagaggagatt
agccgcaattaccagggtgtttggagtaaaaataaagccaacccgagggctgattttatt
gatcctgaattaaaagcaagtttacagactagcccttttcttaaaacaatttctgcacaa
ttggccactttggttgacaaaccacctaaaggggataattggcttcatgagattaaattt
gatggttaccgcatggttgcatttaaaaaaggagacaagattcgatttgtttcccgcaat
caaaaggattggacaacggagtttcaccagctcattcctgatttgcaaaaattgccagta
gaaaatggtatttttgatggcgaaattgtcgctttagacgaaaggagccgctctaatttt
caattattgcaaaactcaataaaatcagaaaaacaatcttctcttttttattatattttt
gatctgttataccttgaacaatatgatcttcgttcattaccccttatcgagcgaaaaaaa
atattaaccacaatactcgaagaagccccattgtccattaaatacagtgatcatgttgtt
ggtcaaggcgaagccatgtttaaacactcatgcgattttgctctggaagggattgtgtct
aagcgggccgatagtcgatacctagggaagcgtagtaaatcttggcttaagattaaatgt
tctaagcgacaggaatttgtggttggcggatttacaaaaccaaagggttctcgaaaacat
tttggttcgctttatttaggtgtttttaatgaagataaggagttagtgtttattgggaat
gtcgggacaggatttactgataaatcactagaagaaatttacaatgaactcaaaccgctt
gaaattaaaaaaaaccctttcaatgaattcccgcctgaagcgaaaacagcaacttgggta
aaaccgaaattgattgttgaagtagagttttcagaatggaccgacgaaggaagactaagg
catcctagctttaaaggacttcgcacggataagaaagcgcaagaggttattaaagaaaaa
gaacgctcgttggaatcaatcgaatcagagccacctgctatgatgggtaatcctcagaaa
ttgtccagtcccgaaaaaattctttataaggaagataaaattagcaaacaagatctttat
gattattacgataaaattagtgattatattctgccgtacatccttaatcggcctttaact
ttagtacgttgtcctaataactataaagaatgtttttatcaaaaacaccttaataaagga
ttgacaaaattacatgaagttcctgttaaaaataaaaaaggtgaagtcgaacaatactta
tacttggataacaaagaaggattgctaaatttagtgcaaatgggcgttttagagattcac
ccttggggaagcacgattaaccatcttgagcatcctgatattttgatttttgatttagat
cccgctcctgatgtggaatggaaaatggtagttgaggcagcttttgatattagagagcag
ttacagcagtatgaattaacctcttttgttaaaacaacaggtggaaaagggcttcatatc
gttatacccgttaaagcagaatatgactgggatgaagtaaagaactttacccgtgttttt
gttgaatttttagaaaaaagaaatcctgaaaaatacatcagtaaaatgacaaaagctaag
cggaagggaaaaatttttattgattatctgcgcaatcagcgtgacgccacagcaatcgca
ccttattcaactcgtgccagaattcatgcccccatcgctacgcccattcggtgggatgaa
cttagtgaacaatatgaagacacattttatacgatccgtactgtattaaagcgtttacaa
gcgttaaaaaccgatccgtggagagggttttggactctatcccaatctttaagattgaat
gaattgtga
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