Talaromyces marneffei: EYB26_001593
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Entry
EYB26_001593 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tmf
Talaromyces marneffei
Pathway
tmf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EYB26_001593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmf03400
]
EYB26_001593
Enzymes [BR:
tmf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EYB26_001593
DNA repair and recombination proteins [BR:
tmf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
EYB26_001593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
RTT107_BRCT_5
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
79161566
NCBI-ProteinID:
XP_054116877
LinkDB
All DBs
Position
1:join(4325313..4325380,4325431..4327526,4327583..4328404,4328475..4328488)
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AA seq
999 aa
AA seq
DB search
MSQLDRDTRIPDAGPLDEDLDEKYPNRPHNHSSTLLFHDLLTGLFNPLNDNKKKPAAGPA
RRKVGPSGPSSLNPQERRRDIIQRFISRWRKDVGDDIYPAFRLIVPDKDGDRAMYGLKEK
VIGKLLVKIMKIDKNSEDGFNLLNWKLPGQSAASRMAGDFAGRCYEVLSRRPMRTDVGDM
RIEEVNDRLDQLSAASKEDQQLPILAEFYRRMNPEELMWLIRIILRQMKVGATERTFFDV
WHPDAERLFSISSSLRRVCWELHDPNIRLEGDERGVSLMQCFQPQLAQFQMHSFEKMVQR
MRPTEEDPTFWIEEKLDGERMQLHMETDDSVEGGKKFCFWSRKAKDYTYLYGNGFFDPNG
SLTRHLKDAFVDGVDNIILDGEMITWDPEQDAPVPFGTLKTAALAEQRDPNAKGPRPLLR
VFDILYLNDRELTRHTLRDRRNAIEKAIRPVHRRFEIHPYTEATTAAEIEPILRKVVEEA
SEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGEALDLVIIGGYYGSGKRGGVLSSYLC
GLRVDDRNESNSMKCYSFCKVGGGFTASDYANIRHHTDGKWKPWNPKKPPTEFIELAGGE
VAQKERPDEWIRPDESVVVCVKAASVSVSEEFRMGLTLRFPRFKKLRMDKDWKSALSVQE
FLDLKSNVEKEQKEKEFTVDNSRRKRIKASTKKPLTIAGYDEEAKMEYAGPSGNVFDNMN
FFVMTDANGPKKKSKAELEQLVKSNGGKIYQTNTAAPKTVCIADRRTVKVASLQKSARED
IIRPNWLFDCIKQNEIDRHLSCYLLPLEPRHMFFTTEDRRGEIDDNVDVYNDSYARDVTP
EELRTILDAAKPSRQQLIEYDAEIDKISETVFEQAHEGGTTPPGWLFRGLAMHFHESADS
SDTSDQIRLFLAQKVAEFGGAEIVDDMGITSGKQKGHATHIVVVATDDSIKGEIANIRKT
LAQQQMSDRGLKVPHIVTMGWIEQSWKERTLLDEERFSP
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagctagacagagataccagaatccccgatgcgggcccgctcgatgaggacttg
gacgagaaatacccaaatcgcccgcataatcattcatcaactcttctgtttcatgatctc
ctgactggcctcttcaatccattaaacgacaacaagaaaaagcccgctgcaggtccagct
cgtagaaaagtcgggcctagtggaccctccagtctaaacccgcaggagcgccggcgagac
attatccagcgattcatctcgcgctggcgcaaagatgtgggcgatgatatttatcctgcc
tttcgactcattgttcccgataaggatggggaccgcgccatgtatggactgaaagaaaaa
gtcatcggaaaactgcttgttaaaatcatgaaaatcgataagaactccgaagatggcttc
aacctcctgaattggaaacttcctggtcagagtgcggctagccgtatggcaggcgatttc
gccggtcgatgctatgaagtcttatcacgaagaccgatgaggaccgatgtgggagatatg
cgtattgaggaggtcaacgatcgcttggatcagctatcagctgcatccaaggaagaccag
cagctgccgatcttagctgagttttatcgccgcatgaatccagaagagcttatgtggctg
atccgtatcattctgcgacaaatgaaagtcggggccacggaacgtacatttttcgacgtg
tggcacccggatgctgagcggcttttcagtatctccagtagtttgagacgtgtctgttgg
gaattgcatgatccgaatattcggttggagggggatgagcgcggcgtgtcactgatgcaa
tgttttcaacctcaactggcacagtttcagatgcattcttttgagaaaatggttcagcga
atgcgaccgacagaagaggatcccacattttggatcgaagagaaactcgatggtgagcgg
atgcagctacacatggaaacagatgactctgttgagggaggcaagaagttctgcttttgg
tcccgaaaggccaaggattatacttatctgtatggaaatggattttttgatcccaatggc
tccttgacccgacacttgaaggatgcttttgttgatggagtcgataatatcattctggac
ggtgaaatgattacatgggatcccgagcaagacgcaccagtcccatttggaacgttgaaa
acagcagctttggcggaacaacgagacccaaatgcaaaaggaccgcgtccgttactccgg
gtgtttgatatactgtatctgaacgatagggaactgacacgccatacactaagagatcgc
cgcaatgccattgaaaaggctattcgacctgtgcatcgcaggtttgagatacacccatat
acagaggctactaccgccgccgagattgagcctattctcaggaaagtggttgaagaagct
tctgagggactggtgttgaaaaacccacggtcaccctacagattgaacgaacgccacgat
gactggatgaaggtcaaacctgagtatatgactgaatttggtgaggctctagatcttgtt
atcattggaggctattacggctccggaaaacgcggaggtgttctttcgagttacctctgc
ggtctgcgtgtggatgatcggaatgagtcgaattcaatgaagtgctattcattctgcaaa
gttggcggtggctttactgcatctgactatgcgaatatccgccatcacacagatggaaaa
tggaagccatggaatcctaaaaagccaccaactgagttcatcgaattagcaggtggagag
gtcgctcaaaaggaaagacctgatgagtggatcaggccagatgaatcagtcgtagtttgt
gtgaaagctgcatctgtctcggtcagtgaagaattccgtatgggcttgacactacgattc
ccgcgtttcaagaagttgcggatggacaaagactggaaaagtgcattgtctgtccaggaa
ttcttggatttgaaatccaatgtcgagaaggagcagaaagagaaagagtttaccgttgac
aactcgcgtcggaagcggatcaaggcatctacaaagaaacccctgactattgcgggttat
gatgaggaagcgaaaatggaatatgccggcccatcaggaaatgtgtttgataacatgaac
tttttcgtcatgaccgatgccaacggcccaaagaagaagtctaaggccgaactcgagcaa
ctagtcaaatccaacggcggaaaaatctatcaaacaaacacagctgcgcctaagacagtc
tgcatcgcagatcggcgaaccgtcaaagtcgcatccctacagaaaagtgctcgtgaggat
atcattcgaccaaactggctgtttgactgtatcaaacagaatgaaatcgataggcatttg
tcctgttatcttctccccttggaaccgcggcatatgtttttcacgacggaggatcgacgg
ggtgagattgatgataatgtcgatgtctacaatgacagttatgcgcgggatgttacgccc
gaagaactcagaacgatcttggatgcagccaagccttcacggcaacaattgattgaatat
gatgcggagatcgataagatttccgaaacggtctttgagcaagctcatgaaggagggact
actccacctggttggcttttcaggggtcttgccatgcatttccatgaatccgcagactcg
tcggacacctcagaccagatccgactcttcctcgctcaaaaagtggctgaattcgggggc
gcagaaatcgtcgacgatatgggtatcacatctggtaaacagaagggacacgcgacacac
atcgtcgtcgtcgccactgatgactccatcaagggcgaaatcgcaaatatccgcaagacc
ctcgcacaacaacagatgtctgatcgtggcttgaaagttccacatatcgttactatgggg
tggatcgagcagagctggaaagagcggacattgttggatgaggagcgattctcgccatga
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