Phaeoacremonium minimum: UCRPA7_6152
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Entry
UCRPA7_6152 CDS
T03102
Name
(RefSeq) putative dna-directed rna polymerase ii largest subunit protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tmn
Phaeoacremonium minimum
Pathway
tmn03020
RNA polymerase
tmn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UCRPA7_6152
09124 Replication and repair
03420 Nucleotide excision repair
UCRPA7_6152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmn03021
]
UCRPA7_6152
03400 DNA repair and recombination proteins [BR:
tmn03400
]
UCRPA7_6152
Enzymes [BR:
tmn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UCRPA7_6152
Transcription machinery [BR:
tmn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
UCRPA7_6152
DNA repair and recombination proteins [BR:
tmn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
UCRPA7_6152
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
19326779
NCBI-ProteinID:
XP_007916883
UniProt:
R8BGC8
LinkDB
All DBs
Position
Unknown
AA seq
1649 aa
AA seq
DB search
MANLYFTHSSAPLKTIQEIQFGLLSPEEIKNMSVAHILYPETMDESRMKPRDGGLNDPLL
GSVDRQFKCKTCTENMSECPGHFGHIELAKPVYHPGFIKKTKKILEMVCHNCSKVLADRS
DPEFAAAVMTRDPKVRFQRVWEACKKKKRCENEVKQEDDEFNPEGKPKAPAFNHGGCGNI
QPAVRHTALNLFAAYEVPQEEGGKVKEKKVITAEQAHNILRRISDSDLSDMGLNKDYARP
EWMIVTVLPVPPPPVRPSISMDGTGQGMRNEDDLTFKLGDIIRANGNVKQAMQEGSPAHI
AQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS
ARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGRLHQLVQNGPNEHPGAKYVIRS
DGTRIDLRHHRRAGQISLEYGWKVERHLIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTF
RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTL
AGVYKLCRRDVLLTKEQVMNAMLWVPGWDGIIPVPAILKPRPRWTGKQIISMVIPKEVSL
HSGNDTKEDAPLRDDGVLIQTGELMYGLLSKKIVGATGGGIIHIVYNELGSTAAMNFLNS
CQRVVNYWLLHNGFSIGIGDTIPDKKTIEKVQVHIDDQKEEVRELTALATANKLEALPGM
NVRETFENKVSKALNTARDKAGTTTEKGLKDLNNAVTMARSGSKGSSINISQMSALVGQQ
IVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTA
VKTAETGYIQRRLVKALEDVSAKYDGTVRNSLNDIIQFLYGEDGLDGMHIEKQRVDHLNM
SNAAFADRYKLDVMDESRPAAFEALEYANEISGDPVAQELLDAEYEHLLEDRKLVRDINS
RKKDEEMMQLPLNIVRIIDSAKKLFKIDDTQRSDLRPQDVIPAVQGLLDRMAVVRGDDPI
SKEADYNSTILYKAQLRSRLAYKRLAVHQRLNRLAFDHLLGEFESRWARSFVNPGEMVGV
LAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASDIKTPGMVVYLDTEDAT
QEAAKVLRSAVEHTNLRSVTAMTEIYYDPDIRSTNIEADIDIVESYFLIPDSEAVDNTDQ
QSRWLLRITLDRQKMLDKGLTVEDVASRIKEDYSSDLAVIFSDNNADEQVLRIRPLRTDD
DKDEDSNRRIEDDVMLKRLETHLLDKLTLRGVPGIERAFLNKETKLLEMPDGSLKAAKND
TMFDEWYLDTQGTALRQVLAVEGVDPTRTYTNQLHQVVDVFGIEAARTALLRELTLVLAF
DGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAAATGEL
DDCRGISENVMLGQLAPMGTGHFEVQLDPAMLDTLMSDDMRANNVSGVTGKGGHIEGAAT
PYDTGSPMADGYLGISSPALGNFSPIVGAGSDTPAGFATEYGGGFGMGTPNVTELLSGLA
DCWQELLSYVAQPVQLAYFSELFSSQSELQPGVTELQRDFPILLAGFSKLVSNIARGILS
YESDLPAIPWAGAITHQPRLFSYVAIVLA
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctctacttcacgcactctagtgcgcctctgaagacgattcaggagatccag
ttcggtctcctgtcgcctgaggagatcaagaacatgagtgtggcgcatatcttgtacccc
gagacgatggatgagagccgaatgaagccacgcgacggtggtctcaatgatcctctccta
ggttctgttgatcgtcagttcaagtgcaagacgtgcacagagaacatgtccgagtgtcct
ggtcatttcggtcacatcgagttggccaaacctgtctaccaccctggcttcatcaagaag
acaaagaagatccttgagatggtttgccacaactgcagcaaggtgctggctgacaggagc
gaccccgagttcgctgccgcggtgatgacgagagatccaaaagtccgattccagcgcgtc
tgggaggcgtgcaagaagaagaagcgctgtgagaacgaggtgaagcaggaggatgacgag
ttcaatcccgaaggcaagcctaaggcccccgcatttaaccatggcggttgcggtaatatt
cagcctgctgtccgacatacggcactcaacctcttcgcggcgtacgaagttccacaggaa
gagggtggcaaggtcaaggagaagaaagtcattacagccgaacaggcgcacaacattctc
cgtcggatcagcgactctgacctttcagacatgggcttgaacaaagactacgctcgtccc
gagtggatgatcgtcaccgtccttcctgttccgccaccgcctgtccgacccagtatctcc
atggacggtactggccaaggtatgcgaaacgaggatgacttgactttcaagcttggtgac
atcattcgcgccaatggaaacgtcaaacaggccatgcaggaaggctctccagcccatatc
gcccaagattttgagcaacttcttcaatatcatgttgccacgtacatggacaatgatatc
gctggtcagcctcgcgctctgcagaagagcggccgtcctgtcaaggctattcgagctcgt
ctcaagggtaaagaaggtcgtcttcgtggtaacttgatgggtaagcgagtggatttctcc
gcacgtactgtcatcacaggtgatgccaacatctctctcgacgaggtaggcgtgccgcga
agcattgcgcgcacactgacctatccggaaaccgtcacaccatacaatattggccgattg
catcaactcgtccagaatgggcctaatgagcatcctggtgcgaagtatgtcatccggtca
gacggaaccagaattgatcttcgccatcatcgacgtgccggtcaaatctcgttggagtat
ggttggaaggtcgagcgtcatcttattgatggtgatttcatcatcttcaatcgtcagcct
tcgctgcacaaggagtccatgatgggtcacagagtgcgtgtcatgccttattccacgttc
cgattgaacctttcagtcacctcgccttacaacgccgatttcgatggtgacgaaatgaat
cttcacgtccctcaaactgaggaaactcgagctgaggtcatgaatctttgcatggtgcct
ctcaacatcgtctcgcctcagcgaaacggtccattgatgggcattgtccaggatactttg
gctggtgtctacaagctctgccgccgagatgttcttctcaccaaggagcaagtcatgaat
gccatgctctgggtccctggctgggatggcattattcccgtccctgctattctcaaacca
cgacctcgatggactggtaaacagattatcagcatggtcatccctaaagaggttagcttg
cactctggcaacgacaccaaggaggacgcgcctttgagggatgacggtgttctgattcag
accggtgagctcatgtacggcttgctctccaagaagattgtcggtgctacaggaggtggt
attattcacatcgtatacaacgagcttggttctacagctgccatgaacttcctcaattca
tgccaacgtgttgtcaactattggcttctccacaacggtttcagcattggtatcggtgat
acgattccagataaaaagaccattgagaaggtccaagtacacattgatgaccaaaaggag
gaggtcagagagctgactgccttggcaacggccaataagcttgaagccttgcctggtatg
aacgttcgagaaacctttgagaacaaggtttccaaggcactcaacaccgctcgtgacaag
gctggtacaaccactgagaaaggtctgaaggacttgaacaacgccgtcaccatggcccgt
tctggttccaagggctcttctatcaacatttctcagatgtctgcacttgtcggtcaacag
atcgtcgagggtaagcgtattccgttcggatttaagtatcgaacacttccgcatttcacc
aaggacgactattctccggaggcccgtggcttcgtcgagaactcttaccttcgtggcttg
acaccctcggaattcttcttccacgccatggctggtcgtgaaggtctgattgatacagcc
gttaagactgctgaaactggatacattcagcgtcgtcttgtcaaagctctggaggatgtc
agtgctaagtacgatggcaccgttcggaactctctcaacgatatcattcaattcctgtac
ggtgaggacggtctagacggtatgcacattgaaaagcagagagtggatcacctcaacatg
tcgaatgctgcttttgcggaccgatacaaacttgatgtcatggatgagtcgcgaccagct
gccttcgaagcgctggagtatgcaaatgagatatctggtgatcccgttgcgcaagagctc
ctcgatgcagagtacgagcatctattggaggaccgcaagcttgttcgggatatcaactcc
aggaagaaggacgaggaaatgatgcagcttcctctcaacatcgtgcgtatcattgacagc
gccaagaagctattcaagatcgatgatacgcagcgcagcgatctacgacctcaagatgtc
atcccagctgttcaaggcctgctagaccgaatggcagtcgtccgtggtgacgatccgatc
tccaaggaggctgactataattccaccatcctgtacaaggctcaactaaggtcacgtctt
gcatacaagcgtctcgcggttcatcaacgcctcaaccgcctcgctttcgaccatctcctt
ggagagttcgagagtcgttgggcacggtcttttgtcaaccctggtgaaatggttggagtg
cttgctgcccaatccattggagagcctgcaacacagatgacattgaacaccttccacttt
gctggtgtgtcgtccaagaacgtgacgctcggtgtgccgcgtctcaaggaaattctcaac
gtcgctagcgacatcaagactcctggcatggtggtttaccttgatacagaagacgctaca
caggaggctgccaaggtcttgcgaagcgctgtcgagcataccaatcttcgatcagtcact
gccatgacagagatctactacgatcccgacatcagatcgaccaacattgaggccgatatt
gacatcgtcgaatcatacttcctcattcctgattcggaagccgttgacaatacggatcaa
caatcccgatggctgctacgtatcacattggatcgtcaaaagatgctcgacaagggtctc
actgttgaggacgttgcctcgcgtatcaaggaggattattccagcgatctggccgtcatt
ttcagtgataacaacgctgatgagcaggtgttgcgtattcgaccacttcgtacggacgat
gacaaggatgaagacagcaacagacgtatcgaagacgatgttatgctcaagcgtctcgag
actcatctgcttgacaagctgaccctccgcggagtgcctggcattgaacgagctttcctg
aacaaggagactaagcttttagagatgcctgatggttcgctcaaggctgcaaagaacgat
acaatgttcgacgagtggtacttggatactcagggcactgctcttcgtcaggttcttgct
gtggaaggtgtggatccaacacgcacttacaccaatcagctgcaccaggttgtcgatgtt
tttggtatcgaagctgctagaacggcacttctgcgcgagttgactctagttttggccttc
gacggttcttacgtcaaccatcgccatctggcgcttctggtcgatgtcatgacttacagg
ggaagtatcgctgctgtcactcgacatggtatcaaccgcgctgacacgggtgctctgatg
cgttgctccttcgaggaaacagtcgagattctgctggaggctgcggccactggtgaactg
gatgactgccgcggtatatccgagaatgtgatgctgggacagcttgcaccaatgggaaca
ggtcactttgaggtgcaacttgatccggcgatgctcgacactctcatgtcggatgacatg
cgtgccaacaatgtttctggtgtcacaggcaaagggggtcacatcgagggtgcggccacc
ccgtacgataccggatcgccgatggctgatggttatctcggtatcagctcacctgcattg
ggcaacttctcgccaattgttggtgctggttcagacactccggctggatttgccacggaa
tatggtggtggttttggaatgggtacgcccaacgtcaccgaattactctccggcctcgcc
gactgctggcaagaactactctcctacgtcgcccaaccagtacaactcgcctacttctcc
gaactattctccagccagtccgaactacagcccggcgtcaccgaacttcaacgcgacttc
cccatcttactcgccggcttctccaaattggtctccaacatcgccagaggcatactctcc
tacgagtccgaccttccagcgatcccctgggcaggtgcaatcacccaccagcccaggcta
ttctcctacgtcgccatcgttctcgcctag
DBGET
integrated database retrieval system
