Thermaerobacter marianensis: Tmar_1127
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Entry
Tmar_1127 CDS
T01388
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tmr
Thermaerobacter marianensis
Pathway
tmr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tmar_1127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmr03400
]
Tmar_1127
Enzymes [BR:
tmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tmar_1127
DNA repair and recombination proteins [BR:
tmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tmar_1127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADU51240
UniProt:
E6SKN2
LinkDB
All DBs
Position
complement(1364664..1365614)
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AA seq
316 aa
AA seq
DB search
MAEERLRVQVAGRELEVSHLDRVLWPGDGLTKADFIGYLLQVAPYLLPHLRDRPLVCTRY
PDGAGAPGFYQKDAPAGTPPWVRTWPHRTREGRRIRFILADEPATLAWLGQQAAIEIHPW
LSTIHHPHRPDWVVFDLDPGPRATFAMAVEVALLVRQVLAALELEGYPKTSGATGLHVFV
PILPEHPYPVVTEFARRLAGVVERLRPALVTTVRAVAQRPPSSVYLDFLQNGLGKTLVTV
YGPRPRPGAPVSMPVTWDELERGVDPGTFTLRTAPARLQQVGDLWALAEAGRRSLTPACR
RLGLDVAAGRPLPSPV
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggagcggctgcgggtgcaggtggcgggccgggagctggaggtctcccacctg
gaccgggtgctctggcccggcgatggcctgaccaaagccgacttcatcggctacctgctc
caggtggcgccctacctgctgccccacctgcgggaccggccgctggtctgcacgcgttat
cccgacggcgccggcgccccgggtttctaccagaaggacgcgcccgcgggcacgccgccc
tgggtgcgcacctggccccaccgcacccgtgagggccgccgcatccggttcatcctggcg
gacgaaccggccaccctggcctggctcggccagcaggcggccatcgagatccacccgtgg
ctgtccaccatccaccatccccaccgcccggactgggtggtgttcgacctcgaccccggc
ccgcgggccaccttcgccatggccgtggaggtcgccctcctggtccggcaggtgctggcg
gccctggagctggaggggtaccccaagacctccggggccaccgggctgcacgtgttcgtc
cccatccttccggagcatccttatcccgtggtcaccgagttcgcccgccggctggcgggg
gtggtggagcggctgcggccggccctggtcaccaccgtgcgggcggtggcgcagcggccg
ccctcgtcggtgtacctggacttcctgcagaacgggctgggcaagacgctggtgacggtc
tacgggccgcggccgcggcccggggcgccggtgtccatgccggtgacgtgggacgagctg
gaacggggggtggacccgggcacctttaccttgcgcaccgccccggcacggctgcagcag
gtgggcgatctctgggcattggccgaggcgggccgccgctccctgacgccggcctgccgg
cggctggggctggacgtggcggcgggtcgccccctgccaagcccggtctag
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