KEGG   Tremella mesenterica: TREMEDRAFT_25666
Entry
TREMEDRAFT_25666  CDS       T03139                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tms  Tremella mesenterica
Pathway
tms03030  DNA replication
tms03410  Base excision repair
tms03420  Nucleotide excision repair
tms03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tms00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TREMEDRAFT_25666
   03410 Base excision repair
    TREMEDRAFT_25666
   03420 Nucleotide excision repair
    TREMEDRAFT_25666
   03430 Mismatch repair
    TREMEDRAFT_25666
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tms03032]
    TREMEDRAFT_25666
   03400 DNA repair and recombination proteins [BR:tms03400]
    TREMEDRAFT_25666
Enzymes [BR:tms01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TREMEDRAFT_25666
    6.5.1.6  DNA ligase (ATP or NAD+)
     TREMEDRAFT_25666
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TREMEDRAFT_25666
DNA replication proteins [BR:tms03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TREMEDRAFT_25666
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TREMEDRAFT_25666
DNA repair and recombination proteins [BR:tms03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TREMEDRAFT_25666
   NER (nucleotide excision repair)
    Other NER factors
     TREMEDRAFT_25666
   MMR (mismatch excision repair)
    Other MMR factors
     TREMEDRAFT_25666
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 18491520
NCBI-ProteinID: XP_007000654
JGI: Treme1_25666
LinkDB
Position
Unknown
AA seq 671 aa
MNRRPKPLLNCLSCFPTSDLRLTDRASIFTKKDASATEAKGWKEGEPLPYAALVATFEKI
EATTKRLEILQILTQFLLVVAKRDTATDAKSSNLLKVVYLCINRLCPDYMGIELGIGESL
LVKSIAESTGRAMSKIKEDLRKEGDLGKVAMNSRNNQPTMFKPKALTVPYVFQSLTEIAK
ASGNASQNKKVGIINKLLAACQGTEAKFIVRSLEGKLRIGLADKTLVVALAHAMVLKRDK
RIGGEELAKKLEEGADIVKSIYSELPNYDLIIPALMKGGIEGLQENCKLTPGVPLKPMLA
KPTKAITEVLDRFEGKEFTCEYKYDGERAQVHLLEDGTIAVFSRNSENMSAKYPDLVEQL
PRCIKEGVKSFVIDAEAVAYDLEQKKLLPFQDLSRRKRKDVRTEDITVRVHLFAFDLLYL
NGESLLQKELKERRSLLQKHFQPIPSEFAFAVSSDCTTTEEIQSFLEESVKDGCEGLMVK
MLTTQSSTYEPSRRSINWLKLKKDYLSGIGDSLDLVVIGAYYGKGKRTSVYGAFLLSCYD
PDSEHYQTICKIGTGFSEEILIKFHEMLKPLELQVVRGDIEVGGAKPDVWFEPKIVWEVL
TADLSLSPIYTAAHGLVDSRGISLRFPRFIRIREDKSSDEATTSEQVSEFYQRQVTAGGK
KNVGGEGDDFW
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgaacaggagaccaaagccgctgttaaattgtttgtcttgtttcccaacatcggatctt
agactgactgacagggcgtccatatttaccaagaaagatgcttctgcaacagaagccaag
ggatggaaagagggtgaaccgttgccatatgccgcgttagtagcgactttcgaaaagatc
gaagcgacaactaagcgattggaaattctacaaattttgactcaattcctccttgtggtg
gcgaaaagagatacggcgaccgatgcgaaatcttccaatctcctgaaagtggtgtatcta
tgtattaacagactatgtccggattatatgggtatcgaattgggaataggagagtcattg
ttggtcaagagtattgcggagagtactggacgagcgatgtcaaagataaaagaggattta
cgaaaggaaggtgatttgggtaaagtggctatgaattcacggaataatcaacctacaatg
ttcaagccaaaagcattgacagtaccatacgtcttccaaagtttgacagagatagcgaaa
gcttcaggcaacgcttcacagaataaaaaagtgggaatcatcaacaaactcctcgccgca
tgtcaaggtacagaagccaaattcatcgtccgatcccttgagggaaagctacgaataggt
ttggcagataagacattggttgtagcattagcacatgccatggttctcaagagagataaa
cgtatcggtggtgaagaattagcgaaaaagttggaagaaggagcggatatcgtcaaatct
atctacagtgaattaccaaattacgatttgatcattcctgctttgatgaaaggcggtata
gaaggattacaagagaattgcaaacttactcctggagtacctctgaaacctatgttggcc
aaacctacaaaggctatcacggaagttttagatagattcgaagggaaagaattcacttgc
gaatataaatatgatggtgaacgtgctcaagtacatttgttagaagatggaacaattgcc
gtgttcagtaggaatagtgagaatatgagtgcgaaatatcctgatttggttgaacagtta
ccaaggtgtatcaaagaaggagttaaaagttttgttatcgacgctgaagctgtggcatac
gatttggaacagaagaaactgttaccttttcaagatttatctcgaaggaaaagaaaggat
gttcggacggaagatataaccgttcgtgtacatttgttcgcttttgatttgttgtatttg
aatggggagagtttacttcaaaaagaattaaaagaacgtcgttccctactccaaaaacat
tttcaacctatcccttcagaattcgctttcgcagtatcaagtgattgtacaacaaccgaa
gaaattcaatctttcttagaagaatcagtaaaagacggctgtgaaggtctaatggttaaa
atgttaacgacacaatcatcaacttatgaaccatcacgtcgttctataaattggttgaaa
ttgaaaaaagattatctatcaggtattggagattcattagatttagtagtcatcggtgct
tattacggtaaaggaaaaagaacttcagtttatggtgcttttttattatcttgttatgat
cctgattctgaacattatcaaactatatgtaagatcggtactggtttcagtgaagaaatt
ttgataaaatttcatgaaatgttaaaaccattagaattacaagttgttagaggtgatata
gaagtaggtggtgctaaaccggacgtttggtttgaacctaagattgtttgggaagttttg
actgctgatttaagtttaagtcctatttataccgctgcacatggtttggtcgattctcgt
ggtatttctctacgtttcccgagattcatacgaatcagagaagataagtcttcagacgaa
gctaccacttctgaacaagttagcgaattttatcaacgtcaagtaactgctggtggaaag
aaaaacgttggaggagaaggggatgatttttggtga

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