Tremella mesenterica: TREMEDRAFT_44243
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Entry
TREMEDRAFT_44243 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tms
Tremella mesenterica
Pathway
tms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREMEDRAFT_44243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tms03019
]
TREMEDRAFT_44243
03036 Chromosome and associated proteins [BR:
tms03036
]
TREMEDRAFT_44243
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TREMEDRAFT_44243
Messenger RNA biogenesis [BR:
tms03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
TREMEDRAFT_44243
mRNA degradation factors
5'-3' decay
Decapping complex
TREMEDRAFT_44243
Chromosome and associated proteins [BR:
tms03036
]
Eukaryotic type
Gene silencing
piRNA pathway
TREMEDRAFT_44243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18493598
NCBI-ProteinID:
XP_007004994
JGI:
Treme1_44243
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MASSSSSGLKDWRAGLAPPVKDDRPQTEDVLATEGSTFENFGLRRELLMGIFTAGFENPS
PIQEQSIPLALSGRDILARAKNGTGKTASFIIPTLNRINTKANHIQAVLLVPTRELALQT
SQVCKTLGAHIPNLQVMVTTGGTTLRDDILRLQEPVHILVGTPGRVLDLGGKGIANLKQC
GIFVMDEADKLLSEEFTPVIEQLLALCPSERQLMLFSATFPWNVKHFSDRHMIQPHEINL
MDELTLKGVTQFYAYVEERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITDLGYS
CFYSHARMLQAHRNRVFHDFRAGMTRNLVCSDLLTRGIDIQAVNVVINFDFPKTAESYLH
RIGRSGRFGHLGLAISLLTLEDRHNLYRIESELGTEIAPIPAVIDPVLYVSPGEIKPEPT
ASRPTPKSTPAPGPIAPVPASRPTPQLTQPQSIQPAAPPVAPAQALRSTPSPNIRDNAAL
PAKPETPMQNKPATYDGRPPNFSRDNSRDGQPGGRGRGNGERGRGRGRNDGPRRGGGRGQ
PFAQAPAVVNSS
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatcttcatcgtctggtctgaaggactggcgagcaggtcttgcacctccggtc
aaagatgaccgaccacagacagaggatgtcctcgctaccgagggttccacttttgaaaat
ttcggtcttcgaagggaacttctcatgggcatattcaccgctggcttcgaaaacccttct
cccatccaagaacaaagcattcccctcgctctgtcagggcgagatatcctggcacgggcc
aagaacggcactggcaaaaccgcgtcattcatcattcccaccctcaaccgtatcaacacc
aaagccaatcatattcaagcagtgctcctagtcccaaccagagaactcgctctacaaaca
tcacaagtctgtaaaaccctcggagctcatattccaaatttacaagtcatggtcacaacc
ggtggtacaactctccgagatgacattttaagattacaagaacctgttcatatactagtt
ggaactcctggacgtgtactggacttgggagggaagggtattgccaatttgaagcaatgc
gggatattcgtgatggacgaggcagacaagctccttagcgaggagtttacccctgtgatt
gagcaacttttggcgttatgtccgtcagaacggcagttgatgttattttctgccactttt
ccctggaatgtgaaacatttctccgatcgccacatgatccaaccccacgagatcaatctc
atggatgaactcaccctcaagggtgtcactcaattctacgcttatgtggaagaacgacaa
aaagtacactgtctcaacactctcttctccaaattacaaatcaatcaatcaatcatattc
tgcaactcgacccagcgagtcgagctactcgccaagaaaatcaccgatctgggttattca
tgtttctactctcacgctcgtatgctccaagcacaccgcaaccgagtcttccacgacttt
cgcgccggaatgacccggaatttagtctgctccgacttacttacacgaggcattgacatt
caagccgtcaacgtggtcatcaatttcgactttccaaagaccgcagagtcgtatcttcac
cggataggtcgatcagggcgttttggacatttggggcttgccatctcgctcctcacttta
gaagatcgccataatctataccgcatcgaatcggagttgggcaccgagattgcgcctatc
ccagcggtcatcgaccctgttctctatgtctcgccaggtgagatcaagcccgaacctact
gcttctcgaccaacgccaaagtctactcctgcacctggtccaatcgctccagtgcccgcg
tctcgacccactccgcaacttacgcagccacaatcgattcaacctgctgcccctcctgtc
gctcctgctcaggctctccgctccacaccatcccccaacatccgggacaatgcggctctc
ccggccaaacctgagaccccaatgcaaaataagcctgcaacgtatgatggtcgccctccc
aatttctccagggacaattcaagggatggtcaaccaggaggtaggggaaggggcaacggc
gagcgtggaagagggaggggtcggaatgatggtccgagacgtgggggcggtcggggacag
ccattcgctcaagcacctgctgtggtcaactcatcgtag
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