Tremella mesenterica: TREMEDRAFT_71807
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Entry
TREMEDRAFT_71807 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tms
Tremella mesenterica
Pathway
tms03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TREMEDRAFT_71807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tms03041
]
TREMEDRAFT_71807
Enzymes [BR:
tms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TREMEDRAFT_71807
Spliceosome [BR:
tms03041
]
Complex C
Other components
Step II factors
TREMEDRAFT_71807
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
S1
AAA_22
AAA_30
nSTAND3
AAA_19
PhoH
T2SSE
AAA_16
ATPase
TsaE
SLFN-g3_helicase
EDC4_C
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
18498612
NCBI-ProteinID:
XP_007005252
JGI:
Treme1_71807
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MSTDKELYKLELLSLVTRVSQELFNHTKLQDKSLAEFVIALHEQSKDAVAFQQKLAEIGA
DFPEWFIKNLDRLIVTMHPKYKRKATKIKASRDKNGNGSGDVKDIVARKFPGLALPDQEW
TAADKYIQNRAEREGDGDSLPKSLSVDDAMIELASVSARRNRPSAEDFIDGEPPSKRSRG
TMDQTGRADYSNGDSKTADRYGSMSAAYPGHRGSHRPSQDEKPVLYKIYSGNVNGVRDFG
AFVLLDGVQGRVEGLVHVSNIIGARVQSATELLHRNQRVKVKVMSVTGNKYSLSMKDVDQ
NTGADLSPHLYVRTDEEARAEERRAAARSASGSNTTPLVSVDERRGKGAKRLSSPERFEI
KQLIASGVIDASDYPDLDDDLHAASNNVEIEEDIDIEVNEIEPAFLAGQTKITLELSPVK
IIKAPDGSLNRAALAGTSLAKERRDLKRLEANESAESESRDLSQPWLDPMANPNERQFAS
DIKGNLVGQKTAQMPAWKAANKVTSYGRITSMSIQEQRRSLPIYKLREQLVQAIRDNQIL
VVVGDTGSGKTTQMAQYLAEEGFLEKGKLGCTQPRKVAAVSVAKRVAEEVGCRLGAEVGY
TIRFEDLTSPETKIKYMTDGMLLRELLVDPDCSKYSVIMLDEAHERTIATDVLFGLMKKA
CKRRPDLKLICTSATLDAAKFATYFWGCPIFTIPGRTFPVEVLYTKDPEPDYLEAALITI
LQIHLMEPAGDILVFLTGQEEIDTSCEILYERVKALGPQVPELIILPVYAALPSEMQSRI
FDPPPPGARKVVIATNIAETSITIDGIYYVIDPGFAKQNAYDPKLGMDSLIVTPISQAQA
RQRAGRAGRTGPGKCYRLYTEVAYRNEMLPNPIPEIQRTNLASTILTLKAMGVNDLISFD
FMDPPPAPTMLTALEQLYALGALDDEGLLTRIGRKMADFPLDPPLSKMLIKSVDYGCSEE
ALTIVAMLQAGGQVYYRPKDKQAQADAKKAKFHQPEGDLLTLLAVYNGWKGSKFSNPWCF
ENFIHTRAMKTAQDVRKQLIGIMDRYKHDLVSCGSNYNRVRMAICSGFFRNAAKKDPTEG
YKTLVEGTPVSIHPSSALFQRPPEWCVYYELVLTAKEYMHQVTAIEPKWLSEVAPTFFRV
ADQNKISKRKQSEKIEPLFDRFAADKDDWRLSKQKRPTRSSQTF
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgacaaggagctgtacaagctagagctcctgtcgctcgtcaccagagtgtcc
caggagctcttcaatcatacaaagctgcaggacaagagtctggcggaattcgtcatagct
ttgcatgagcaaagcaaagatgccgtcgctttccagcaaaagcttgcagagataggagcc
gactttccggaatggttcatcaagaacctcgatcgtctcatcgtcaccatgcatccgaaa
tacaaacgcaaggcaacaaagatcaaagcttctcgtgataagaacggcaatggcagcggc
gacgtgaaggacatcgtcgctcgaaagtttcctggtctcgcccttccggatcaggaatgg
accgcggccgacaagtatattcaaaatagggcggagagagaaggtgatggcgactcatta
cccaagtctctatctgtcgacgacgcaatgatcgaactcgcatccgtgtcggcgaggcgg
aatagaccatccgccgaggatttcattgacggagaaccgccctcgaaaaggtcaagaggc
acgatggatcagactgggagggcggattacagcaatggagactcaaagactgccgatagg
tacggaagcatgtccgccgcctacccgggtcatcgaggctcacatcgtcctagccaggac
gagaagcctgtgctctacaagatttatagcggtaatgtgaatggggtgcgtgattttgga
gctttcgtgctccttgatggagttcagggtcgggtagaaggcctcgttcacgtttcaaac
atcattggtgccagggtgcaatccgccacggagctgctgcatcgaaatcaacgtgtgaaa
gtaaaagtcatgagtgtcactggcaataaatacagtttgagtatgaaagatgtagaccag
aacaccggagcggacctttcacctcacctatacgtgcgcacagatgaagaagcgagagca
gaagagagacgggcagcggctcgttcagcgtctggaagtaatacaacaccgctagtatca
gttgacgaacggaggggaaagggcgccaagagattatcgagcccggagagattcgaaatc
aagcaattgatagccagcggcgttatcgatgcctcagattatccagacttagacgatgac
ttacatgcggcatctaacaatgtggagattgaggaggacatcgatatcgaggtcaatgaa
atagagccagctttcctcgccggtcaaacaaagattactctcgagctgtctcctgtcaaa
atcatcaaggctcctgatggatctctcaaccgtgctgctctagcaggtacatccttagcg
aaagaacgacgtgatcttaaacgcttggaagccaacgaatccgccgagtctgaatcccga
gatctgtctcagccgtggctggacccaatggccaatcctaacgagcgtcagttcgcttct
gacatcaagggtaatttggtcgggcagaagactgcgcaaatgccagcctggaaagcggcg
aacaaagtgacatcgtacggccgtataacttcgatgagcattcaggagcagcggcgtagt
ctgccaatatacaaactgcgcgaacaactggtccaagccattcgtgataatcaaattctg
gtggttgtcggtgacaccgggtcggggaaaaccactcagatggcgcaatacttagctgag
gaaggctttctggagaaaggaaagctcggatgtacacagcctcgaaaagttgccgcggtc
tccgtcgccaaacgtgtcgcggaagaggttggctgtcgattaggtgcagaagttggatac
accatacgattcgaggatctaacaagtcccgaaaccaagataaagtatatgacggacggt
atgcttctgcgtgaactcctggtcgacccggactgctccaagtattctgtcattatgttg
gacgaagcgcacgaaagaacgatagctactgatgtcctcttcggactgatgaagaaggct
tgcaaacgacgcccagacctgaagcttatatgcacttccgctacactggacgcagccaaa
ttcgccacttatttctgggggtgtccaatctttacgattccgggacgaacttttcctgtg
gaggtcctctacacaaaggatccggagcctgattatctggaagccgcgctcatcactatc
ctgcagattcacctcatggagcctgccggcgacattcttgtctttttgactggtcaagag
gagatcgatacttcttgcgagattctttacgaacgcgtcaaagccctggggcctcaagtt
cccgaactcatcatccttcccgtgtacgccgctcttccatcagaaatgcagtcccgaata
tttgaccctccgccaccaggcgcacgtaaagtcgtcattgccacaaatatagccgagacc
agcatcactatcgatggcatctactatgtcatcgatccgggatttgccaaacagaacgct
tacgacccgaaactcggtatggactcgttgatcgtcactcctatctcccaagctcaagct
cgtcaaagagccgggcgtgctggtcgtactggccccgggaagtgttatcgtctttacacc
gaagtagcctatcggaacgaaatgctgccaaatcctatccccgaaattcagcgtaccaac
ttggcgtcgactatcctgacgctcaaagctatgggagtcaatgacttgatcagttttgac
ttcatggatcctcccccagcccctaccatgttgacagcgttggagcagctgtacgctttg
ggagcgcttgacgacgagggcctccttactcgcatcggtcggaagatggccgatttccct
ctcgatccaccattatcgaagatgctcatcaaatctgtcgattatggttgctcagaggaa
gctctgactattgtggccatgctccaagctggaggtcaagtatattatagacctaaggac
aagcaagctcaggcggacgccaagaaggccaaatttcatcagcctgagggagatcttctt
acccttttggctgtctacaatggatggaagggctctaaatttagtaacccgtggtgcttc
gagaactttatccacacaagagctatgaagactgcacaggacgtgagaaaacaactgatc
gggatcatggatcgttacaagcacgacttagtttcgtgcggatccaattacaatcgggta
cgaatggcaatatgctctgggtttttccgcaacgccgccaaaaaagatcccacggaaggg
tacaaaacactagtagaaggcacgcccgttagcatacatccctctagcgccctctttcaa
cggccgccagaatggtgcgtgtactacgagctggttctcaccgcgaaggaatacatgcac
caagtcactgcaatcgaacctaaatggttatccgaggtcgctcctaccttcttccgtgtg
gcagatcagaataagatcagtaaacgaaagcaatctgaaaagattgaacccttgtttgac
cgcttcgccgctgacaaggatgactggcgactcagtaaacaaaaacgaccgacacgatct
tcacagacgttttag
DBGET
integrated database retrieval system
