Tremella mesenterica: TREMEDRAFT_73368
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Entry
TREMEDRAFT_73368 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tms
Tremella mesenterica
Pathway
tms03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TREMEDRAFT_73368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_73368
Enzymes [BR:
tms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TREMEDRAFT_73368
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TREMEDRAFT_73368
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
18498952
NCBI-ProteinID:
XP_007003143
JGI:
Treme1_73368
LinkDB
All DBs
Position
Unknown
AA seq
944 aa
AA seq
DB search
MDVPFESFALLIHRLGHPPKVSSRPTGEKITLTPSKIFASWLAHLPRPFPPYTGKHLFRL
LFPHEGSRRRYGNREHILAKDLEKILGVSGLTRWDSVQWGEHGGSGCLGKEVEFACKDRS
SSSEGRSQISIREVDQLLDQLAATSSFSQLSQQPLPSSRTEVLTRLFRYSGLSPYAMAVL
TQVILRDLRPLLNPLPKMSVRNPTAMLRIKTTAAPAQLELFDAMRQWDPRMLELYRSGIG
SLDRCADLAEKSRNASAGDIGTPVGPMVGINVQIPKCRKGRSIDDALNVFFDERRGVERP
GAVWAETKYDGYRMQIHVELNLNGEPCITIFSKSKRDSTHDRINTHSILCATLGLHTPDH
LPVHPTLAERMEGLPLVKPSVRKSVILEAEVLPYNEGQREGGRGPGLEEFWWLGAAGVTA
TDKIQGRDWRDRRRHLCLAFFDVLSIDGESLLRESYDVRRKTLERIVRPIPGFAFVAERT
LISMTFGRRMASAALEVAFRKCCDDHQEGLILKAAGSTYIGMRWPWVKLKKDYIPDLGDC
IDLVVLGAGWDLDRARELRVDTSVFTTFYIGTLTDSDKVKRREEIPHFEILFRASYGPNR
DTLEIYNEAIRHGRWKTKSYDKDDRLKRASRISYIIRLLGLSWSYTLPNGIPPPSVLFEQ
PLCAEVMGAGFQKLPGGLYELRFPRLQKIYDSRDRPWIDALDSKQLIRTAHDALGYATTV
VSQEDSLDRAWRSSSQYVIDIPDFPTPSPRKLPFSPTRAYSVPSIYKTSPPTPIRSTPVP
SRSSPLKRPSEAAARLQDILRTPEKRKETWEPLSSHGKRLRLLSPPALTRKKRVKSPDEE
IESWESFPNRDKRARPLIRDFPLPDPPRAEDSVSEFPTGLSQLLPSESGLGLRMTTLQPE
SLRNERVRSGKEKEKMGRTLAHLALRPLSIRSRLRMAMTVTTKG
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcccctttgagagttttgccttactcattcatcgacttggtcatccgcctaaa
gtatctagtcgacctacgggagagaaaatcactttgacaccttcgaaaatctttgcctcc
tggctggcccatcttccaagaccttttcccccctacacggggaaacacctgtttcgactt
ttattcccgcacgagggttccaggaggaggtatgggaatcgagaacatatcctcgccaag
gatctagagaagatcctcggggtgtctggtctgacaagatgggatagtgtacaatggggt
gaacatggcggttctggttgtctagggaaagaagtggaattcgcttgtaaggatcgttca
tcaagctcagaaggaagatctcaaatcagtatacgagaggttgatcaattgctcgatcaa
ctagcggctacttcttccttttcacaactttctcaacaacctctaccgtcctctcgtacg
gaagttttgacaagactttttcgatattctggtctctcaccttatgctatggcagtccta
actcaagtcatactacgtgatcttcgacctttacttaatccattacccaagatgtccgtg
cgcaatcccaccgcgatgttgaggatcaaaactaccgccgctcctgctcaattagagttg
tttgatgcgatgcgacaatgggatcctcggatgttggaattgtatcgttccgggattgga
agtttggatcgatgtgccgatttagcggagaagagtcgtaatgcttcagcaggggatatc
ggaactcctgtgggaccgatggtgggaataaacgtccaaatcccgaaatgtcggaaagga
cgatcgattgatgacgccctcaacgtctttttcgacgaaaggcggggtgttgagcgccct
ggggcagtctgggcggagacgaagtatgacggttatagaatgcagatccatgtggaactg
aatctaaatggtgaaccttgcatcaccatcttcagcaagtcaaaacgagatagcactcat
gatcgaatcaatactcacagtatcctgtgtgcaactcttggcttacacaccccggatcat
ctgcccgtacatccaaccttggccgagcgcatggaaggcttgccgcttgtgaaaccttcc
gtacgaaaatcggtcatattggaggcagaagtattgccgtacaacgagggacagagggaa
gggggacgaggtcctggattggaggaattttggtggctaggtgcagcgggtgtgactgca
acggacaagattcaaggccgtgattggagagacagacgcagacatctttgtttggctttt
ttcgacgtcttatcaatcgacggtgagagtttgcttagagagtcgtatgatgtcagaagg
aaaacactggaaaggattgttcgtcccatacccggctttgcattcgtggcagaacgaact
ttgatatcaatgactttcggtagacggatggcctcggcggctcttgaagtagctttcagg
aaatgctgtgacgatcaccaagagggcctcattctcaaagccgccggatcgacttatatc
ggtatgcgctggccatgggtcaagctcaagaaagattatatccctgatctcggtgattgt
atcgacctcgtcgtcctcggagctggttgggatttagatcgtgctagagaactgagagtg
gatacttccgtcttcactaccttctacattggtactttgaccgactcggataaagtcaag
cgtcgagaagagatacctcatttcgaaatcctttttcgtgcgtcttacgggcccaacagg
gatacgctggagatatacaacgaagctattcgacatgggagatggaagaccaagtcgtat
gataaggatgatcgtctcaaacgggcaagtcgtatttcctacatcattagattactcggc
ctatcatggtcttacacccttccaaatggtattccaccaccatcggtcttattcgaacaa
cctctttgtgcagaggtgatgggtgccggcttccaaaagctcccaggagggttgtacgaa
ctccgttttccacgtcttcaaaagatctatgattctcgagatcgaccatggatcgatgct
ctcgactcaaagcaacttattcgaaccgcccatgacgctttaggctatgcgaccactgtg
gtatcgcaagaagattccctggatcgagcatggcgttcatcttctcaatacgtgatagac
attcctgacttccctactccatcacctcgaaaactccctttctctccaacgagagcatac
tccgtcccttcgatatacaagacttctcctcccactccgattcgttccactcctgttcca
tcgaggagctctcctctgaaaagaccgtcggaagcggctgcacgacttcaagacatctta
cgaacccccgagaaacgaaaagagacatgggaaccacttagcagtcatgggaaacgtttg
agactactttcaccaccggcattgactcgaaagaagagggtcaagagtccagacgaggag
atagagagttgggaaagttttccgaatagggacaagagagcaagaccgttgattcgggat
ttcccattgcctgatcctccacgagcggaggactcggtttctgaattccctactggactc
agtcaactcttgccgtctgagagcggattgggactccgtatgacaactcttcaacctgaa
tcgttaagaaatgagcgggtgaggtcggggaaggagaaggagaagatggggaggactttg
gcacatttggccttgaggccattgtcgattcgatctcgattacgaatggctatgacggtg
acgacgaaggggtga
DBGET
integrated database retrieval system
