Thermoanaerobacter mathranii: Tmath_1843
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Entry
Tmath_1843 CDS
T01250
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tmt
Thermoanaerobacter mathranii
Pathway
tmt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tmath_1843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmt03400
]
Tmath_1843
Enzymes [BR:
tmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tmath_1843
DNA repair and recombination proteins [BR:
tmt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tmath_1843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADH61541
UniProt:
D7ARJ9
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All DBs
Position
1864521..1865444
Genome browser
AA seq
307 aa
AA seq
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MTMIEEKISPMLAFSSDPFDNPEWIYEIKWDGSRTIAFLSNKTRLQDRRLVDITHQFPDL
ALLHKQIKAKEAILDGELVVLKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDIL
YLNGKSLVELPLIERKDILRKTVKESEVIKISDFIFEHGKRLFEETGKRGLEGIVAKKVD
SKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRAPSFIQFEYNVK
PEECRFE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgactatgatagaagaaaaaatatcacctatgctggcattcagtagtgacccttttgat
aatcctgaatggatatatgaaatcaaatgggatggttcaagaactatcgcttttctttca
aataaaacaaggcttcaagatagaaggcttgttgatataacccaccagtttccggattta
gcattgcttcataaacaaataaaagcaaaagaagcaatacttgacggtgaactggtagtc
ttaaaaaacggcaagcctagttacaaaagcattatgtcgagaaagcatcaacaaaattta
gtaaaaataaatcttttaagcaagataatgcccgtaattttcataacatgggatatatta
tacttaaacggcaaatctcttgtagaattgccacttatagagagaaaagatatacttaga
aaaacagttaaagaaagcgaggtcataaaaatatctgattttatttttgaacatggcaaa
aggctttttgaagagacaggcaaaaggggacttgaaggaattgtcgccaaaaaagttgat
tcaaaatatttaatagggaaaaggagtaaactgtggcttaagtcaaaacattttattgta
ataaatgcagttattatagggtacagaactgataaaacagctcttatattgggactttac
gatgaggaaaataatttaataaacataggaagttgtgaatcaggcctatcccagaaggaa
ttaaaagcattttatgaagttgccaaggagataaaagctccagataattattataacttt
aaagaaaaaaatgtgcaatggttaaagcctttgctaacatgtaaagtgagatttatggaa
tggtctgaaaacatgaaaatgagggcaccttcttttattcaatttgagtataatgtaaag
ccagaagagtgcaggtttgagtaa
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