Trichechus manatus latirostris (Florida manatee): 101341873
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Entry
101341873 CDS
T05135
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101341873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Pur_ac_phosph_N
VWA_2
Kunitz_BPTI
DUF4992
Interfer-bind
VWA_3
Motif
Other DBs
NCBI-GeneID:
101341873
NCBI-ProteinID:
XP_004368779
UniProt:
A0A2Y9D6L8
LinkDB
All DBs
Position
Unknown
AA seq
2964 aa
AA seq
DB search
MRLRLLVAALCAGVLAGAPRVRAQHGERVTCTRLYAADIVFLLDGSSSIGRNNFREVRSF
LEGLVLPFSGAAGAQGVRFSVVQYSDDPRTEFGLDALGSGGNVIRAIRELTYKGGNTRTG
AAILHVADRIFLPQLARPGIPKVCILITDGKSQDMVDTAAQRLKGQGVKLFAVGIKNADP
EELKRVASQPTSDFFFFVNDFSILRTLLPLVSRQVCTIVGGVPVTLPPDDATSGPRDLVL
SKAGSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLPNERREVSVPAGETSIRLQGLRPL
TEYQVTVVALYANSIGEAVSGTARTTALEGPELTIQNTTTHSLLVAWRSVSGATGYRVTW
RVLSGGAAEQQELGAGQRSVLLRGLEPGTDYEVTVSTLHGHSVGPATTLTARTDTYIEQT
LRPVILGPTSILLSWNLVPKARGYRLEWRRESGLEPPKKVELPSDVIRYQLEGLQPATEY
RLTLYTLLEGREVATPAAVVPTGPELPVGPVMDLQAVELPGQRVRVSWSPVPSATEYRIA
VRSTQGVERTLVLPGSQTTFDLDDIRAGLSYTVRVSARVGAREGDASTLTVRRELETALD
IPGLQVVASDATRVRVAWGPVPGASGFRISWRTGSGPESSQTLSPDSTVTDITGLQPGTA
YQVAVSALRGREEGPPVVIAARTDPLGPVRRVDVTQSGSSSVTITWTRVPGATGYRVSWH
SGHGPEKSQLVSGEATVAELDGLKPDTEYTVHVRAHAAGTDGAPASVVVRTAPELVGRVS
KLQILNASSDVLRVTWVGVAGATNYRLSWGRREGGPTRDQILPGNTDSAEIRGLEGGVSY
SVRVTALVGDREGAPVSIVVTTPPEAPPSLRTLRIAQRGEHSLRLRWEPVPGAHGFHLRW
RPEGGQEQFRELGPEISSYHMDGLEPGTLYHVWLSVLGPAGEGPPTEVTATTESSSVPST
DLHVVDTSIDSVTLAWTPVSGASSYILSWRPLRGPDQELPGTPQTLPGISNSQQVTGLEP
GVSYIFSLIPVQGGVRGPEASVTQSSGCPHGLIDVVFLLHATRDNAHRSEAMRRVLERLV
SALGPLGAQAVQVGLLSYSHRPSPLFPLNSSHDLGIILQKIRDIPYTDPSGNNLGIAVVT
THRYLLAPDAPGRRQHVPGVMVLFVDEPLRGDIFGSIREAQAAGLNVMILGLAGADPEQL
RRLVPGMDPVQTFFAMDDGPSLDRAVTGLATALCQAAAGTQPQPGPCTVRCPKGQKGEPG
ETGLTGQAGPPGPPGLPGRIGAPGPQGPPGSTIAKGERGFPGADGPPGSPGRPGTSGNPG
PKGSPGWPGPRGEMGERGLRGPKGEPGEPGKVIGSEVPGLPGPKGNPGPSGSPGPRGPLG
DPGPRGPPGLPGTSLKGDKGDRGEQGPPGPGYGGTITGEPGLPGLPGSPGPQGPAGPSGE
KGEKGDSQDGAPGLPGLPGTPGQRGLRGPPGDVGPKGDRGLPGNIGEPAEKGEQGPPGPA
GPQGLPGVAGRPGLEGPEGPPGPTGRRGEKGEPGPPGDPAVVGPIGAGAKGEKGEVGPPG
PRGAAGVKGEQGLPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGVLGPPGEKGDPGRPGP
PGPVGPRGRDGEVGEKGDEGLPGDPGLPGKAGERGLRGTPGARGPVGEKGDQGDPGEDGR
NGSPGPSGPKGERGEPGPPGPPGRLVDMGLGAREKGEPGDRGQEGPRGPKGDPGPPGAPG
ERGIDGLRGLPGPQGDPGVRGPAGEKGDRGPPGLDGRNGLDGKPGATGPPGLQGTTGKAG
DPGRDGLPGLRGEQGPPGPPGPPGALGKPGEDGKPGLNGKNGEAGEPGEDGRKGEKGDSG
APGRNGYDGPKGERGAPGSPGLQGPPGLPGQIGPSGQGFPGVPGNVGPKGDRGETGSKGE
PGLPGDRGLRGEPGSIANVERSLEAVGIKMSALREIVETWDESSGSFLPVPERLRGPKGE
PGERGPLGKEGPIGFPGERGLKGDHGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPG
LPGRAGSVGEAGRPGERGERGEKGERGEQGRDGPPGLPGPPGPPGPKVSVDEPGPGLSGK
QGPPGLKGAKGEPGSDGDRGPKGDRGVPGIKGDRGESGERGLAGIRGLPGEQGVAGPEGK
PGLQGERGAPGPMGGRGDPGPPGAPGLAGPSGPQGPSGLKGEPGETGPPGRGLPGPTGAV
GLPGPPGPSGLVGPQGAPGLPGQVGETGKPGAPGRDGASGRDGDRGAPGVPGPPGLPGPV
GPKGEPGPMGAPGQAVVGPPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGLRGEKGDAGH
AGEPGDPGEDGQKGGPGLKGQKGDPGVGIQGPPGPAGPPGMKGDLGLPGPPGAPGVVGFP
GQTGPRGEMGQPGPSGERGLAGLPGREGAPGPLGPPGPPGLVGVSGAPGLKGDKGDPGAG
LPGARGERGEPGVRGEDGRPGQEGPRGLMGPPGSRGEHGEKGDTGTAGLKGDKGDSAVIL
GPPGPRGAKGDTGERGPRGIDGDKGPRGDTGIPGEKGVKGEPGDKGSAGSLGVRGLTGPK
GEPGVAGIPGDLGPPGKDGAPGVRGDKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGET
GSPGRPGLAGRKGEMGEPGVPGQLGTPGREGLIGPKGDRGFDGQPGPKGDQGEKGERGPP
GIGGFPGPKGNDGSSGPPGPPGSVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERG
EQGRPGPAGPRGEKGEAALTEDDIRGFVRQEMSQHCACQGQFITSGSWPLPSYAADTAGP
QLHRVPVLRVSHAEEEGQLPPEDDEFSEYSEYSVDEYKNLEAPWKGEDPCLLPLDEGSCT
AYTLRWYHRAVAGGTGACRPFVYGGCGGNDNRFETHEACERRCPPRVVQSQGTGMALPLL
QLGTGHRAYPDQLPGEEPPDQSPG
NT seq
8895 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcgactcctggtggcggctctctgcgctggggtcctggcgggggcgccccga
gtgcgggcccagcacggggagagagtgacctgcacgcgtctttacgcggctgacatcgtg
ttcctactcgacggctcctcatccatcggccgcaacaactttcgagaagtccgcagcttc
ctagaagggctggtgctgcctttctctggggcagcgggtgctcagggcgtgcgcttttca
gtggtgcagtacagcgacgacccacggacagagtttggcctggatgcacttggctcaggg
ggcaatgtaatccgtgccatccgtgagctcacctacaaggggggcaacacacgcactgga
gctgcgattctccatgtggctgaccgcatcttcctgccccagctagcccgacctggcatc
cccaaggtctgcatcctgatcacagatgggaagtcccaggacatggtggacacagctgcc
cagaggctgaaggggcagggggtgaagctctttgctgtggggatcaagaatgctgaccct
gaggagctgaaacgagttgcctcacagccaaccagtgattttttcttcttcgtcaatgac
ttcagcatcttaaggacgctactaccccttgtttcccgccaagtgtgcacgattgtgggt
ggtgtgcctgtgaccctgccccctgatgacgcgacctctggcccacgggacttggtgttg
tctaaggcaggcagtcaatccctaagagttcaatggacagcggccagtggccctgtgact
ggctataaagtccagtacactcctctgacaggactggggcagccgctgccgaacgagcgg
cgagaggtgagtgttccggctggtgagaccagcatacggctgcagggcctccggccactg
accgagtaccaggtgactgtggttgccctctacgccaacagcatcggggaggctgtgagt
gggacagctcggaccactgccctggaggggccagagctgaccatccagaacaccacaacc
cacagcctcctggtggcctggcggagtgtgtcaggtgccactggctaccgtgtgacatgg
cgggtccttagtggtggggctgcagagcagcaggagctgggcgctgggcagcggtcagtg
ttgctgcgtggcctggagcctggcacagactatgaggtgacagtgagcacactgcatggc
catagtgtggggcctgccaccaccctgactgctcgtaccgacacctacatcgagcagacc
ctgcgcccagtcattctgggccccacatccattcttctgtcctggaacctggtgcccaag
gcccgaggctaccgactggagtggcggcgtgagagtggcttagagccaccgaagaaggtg
gagcttccctctgatgtaatccgctaccagttggaagggctgcagccagccactgagtat
cgtctcacgctctacaccctgctggagggccgcgaggtggccacgcctgcagctgtggtc
cccactgggccagagctgcccgtgggccctgtgatggacctgcaagcggtcgagctgcct
gggcagcgagtgcgagtgtcctggagcccagtccccagtgccactgagtaccgtatcgct
gtgcgcagcacccagggggtcgagaggaccctggtgcttcccgggagtcagacaaccttc
gacttggatgacatccgggcagggcttagctacactgtgcgggtgtctgctcgagtgggc
gcccgagagggtgatgccagcaccctcactgtccgccgtgagctggaaactgcgcttgac
atcccagggctgcaggttgtggcgtcagatgcgacacgagtgagggtggcctggggacct
gttcctggagccagtggatttcgaatcagctggaggacaggcagtggtccagaatccagc
cagactttgtctccagactctactgtcacagacatcacggggctgcagcctgggaccgcc
taccaggtggctgtgtcagcactgcgtggaagagaggaaggtccccctgtggtcattgcg
gctcgaactgacccactgggcccagtgaggagagttgatgtgactcagtctggcagctcg
tctgtcaccatcacctggaccagggttcctggagccacaggatacagagtctcctggcac
tcaggccatggcccagagaaatcccagctggtctctggggaggccacagtggccgagctg
gatgggctgaaaccggatacagagtacacagtccatgtgcgggcccatgcagctggtaca
gacggggcccccgcctctgtggttgttaggaccgcccctgagcttgtgggcagagtgtca
aagctgcagattctcaacgcttccagcgacgttctgcgagtcacctgggtgggcgtcgct
ggagccacgaactacagattgtcctggggccggagagagggtggccccacaagagaccag
atactcccaggaaacacggactccgcagagatccggggcctcgaaggcggtgtcagctac
tcggtgcgcgtgactgcgcttgtcggagatcgggagggcgcgccagtctccattgtcgtc
accacaccacctgaggctccgccgtccctgaggacccttcgaatagcgcaacgcggggag
cactcactgaggctgcgctgggagccagtgcccggggcacacggcttccatctgcgctgg
cgacccgagggtggccaggagcagttccgggaactgggccccgaaatcagcagctaccac
atggatggtttggaaccagggaccttgtaccacgtgtggctgagtgtcctgggtccagct
ggagaaggtccccccacagaggtgactgcgaccactgagtcatctagcgtcccgagcact
gacctgcatgtggtggacacctcgatagactcagtgactctggcctggaccccagtgtct
ggggcatctagctacattttgtcctggcggccactcagaggtcctgatcaggagctacct
gggaccccacagacacttccagggatctcgaactcccagcaggtgacagggttagagccc
ggtgtctcttacatcttctccctgatacctgtccagggaggtgtgcggggccccgaggcc
tctgtcacacagagctcagggtgcccccatggcctgatagatgtggtgttcctgctgcat
gccactcgggacaatgctcaccgttcggaggccatgaggagggtcctcgagcgtctggtg
tctgcacttgggccccttggggcacaggcagtccaggttggcctcctatcctacagtcac
cggccctccccactgttcccgctgaatagctcccatgaccttggcatcatcctgcagaag
atccgtgacatcccctacacggacccaagtgggaacaacctgggcatcgccgtggtcaca
actcacaggtacctattggcgccagatgctcctgggcgccgccagcatgtcccaggtgtg
atggttctgttcgtggatgagcccttgagaggtgacatctttggctccatccgcgaggcc
caggctgctgggctcaacgtgatgatattgggcctggcgggagctgacccagagcagctg
cgtcgcttggtaccaggcatggaccctgtccagactttctttgccatggatgatggtcca
agcctggaccgggcagtcactggtttggcaacagccttgtgtcaggcagccgcgggcacc
cagccacagccagggccttgcacagttcgttgtccaaagggccagaagggagaacctgga
gagacgggcctaacaggacaagctgggccccctgggccccccggcctcccgggcaggatc
ggggctccaggcccccaaggcccccctggaagcaccattgcaaagggcgagaggggcttc
cctggagcagatgggcctccaggcagccctggccgccccgggacttctgggaaccctggt
ccaaagggctccccaggttggcctggccctcgtggggaaatgggagagcgagggcttcga
ggtccgaaaggagagccgggagagcctggaaaagtcattggaagcgaggtcccagggctt
cctggaccgaaaggaaaccctgggccttcgggctcccctggacctcgtggccccttgggg
gacccaggaccccgtggtcccccagggcttcctgggacatccttgaagggtgacaaaggc
gatcgtggggaacagggcccccctggaccaggttatggtggcactattacaggggagcca
gggctgccgggccttcctggaagccccggacctcaaggcccggctggcccctctggagag
aaaggagagaagggtgacagtcaggatggagccccaggcctcccaggactacctgggacc
ccgggtcagcggggcctacggggacctcctggagatgttggccccaaaggtgaccgaggg
ctgccagggaacataggtgagcctgcagaaaagggtgaacagggaccccctggcccagca
gggccgcagggactgccaggtgttgcagggcgtcctggacttgagggtcctgaggggcca
ccaggacccactggccgccgaggagaaaagggggagcctggtccccctggggaccctgca
gtggtggggcctattggtgctggggccaaaggtgagaagggagaagtggggccccctggg
cccagaggagctgccggagtcaaaggggagcagggactacctggattagttcttcctgga
gatcctggccccaaaggagatcctggagaccggggtcccattggcctcactgggagagca
ggacccccgggtgtcttgggacctcctggagagaagggagaccctgggcggcctggaccc
ccaggacctgttggcccccgaggacgagatggtgaagttggagagaaaggtgacgagggc
cttccgggtgacccaggtttgcctggaaaagctggcgagcgtggccttcgggggacacct
ggagctcgggggcctgtgggggagaagggagaccagggagatcctggagaggatggacga
aatggtagccctggaccctctggacccaagggtgaacgtggggagccgggtcctccagga
ccccctggacggctggtggacatggggcttggagccagagagaagggagagcctggggac
cgtggacaggagggtcctcgaggacccaagggtgaccccggcccccctggagcccccggg
gagaggggcatcgacggactacgggggctcccgggcccacagggggatccaggtgtccga
ggcccagcaggagaaaagggggaccggggccctcctgggctggatggccggaatggactg
gatgggaaaccaggagctactggcccccccgggctgcagggcactacgggcaaagctggg
gacccagggagagacgggcttccaggcctccgaggagaacagggccctcctggcccccca
ggacctcctggagcactgggcaagccaggcgaggatggcaaacccggcctgaatgggaaa
aacggagaagccggggagcccggagaagacgggaggaagggagagaagggagattcgggt
gcccctgggagaaatggttatgatggccccaagggtgagcgtggagctcctggtagcccc
ggactccagggccccccaggcctcccagggcagataggcccctctggccagggttttcct
ggtgtcccaggaaatgtgggccccaagggtgaccgtggggagactggatccaaaggagaa
ccgggcctccctggagaccgtggcctgagaggagaacctgggagcattgcgaatgtggag
cggtcactggaagctgttggcatcaagatgtctgctctgcgggagattgtggagacctgg
gatgagagctccggcagcttcctgcctgtgcctgaacggcttcgtggccccaagggggag
ccaggagagcggggacccttgggcaaggagggccccattggttttcctggagaacgcggg
ctgaaaggagatcatggagaccctggtcctcagggcccgccgggcctggcccttggggag
aggggcccccctgggcctcctggccttgctggggagcctggaaagcctggtattcctgga
ctcccaggtcgggctgggagtgtgggagaagcaggaaggccaggagagaggggagaacgg
ggagagaagggagagcgtggagaacagggcagagatggccctcctggccttcctggaccc
ccaggcccccctggccccaaggtgtccgtggatgagccaggtcctggactctctggaaaa
caaggaccccctggactcaagggcgctaagggggagccaggcagcgatggcgaccgaggc
cccaaaggagacaggggcgtgccaggcatcaagggagaccggggagagtctggagagagg
ggtcttgctggcatccggggtctaccaggagagcagggcgtggctgggcctgaagggaag
ccgggcctgcagggtgagagaggagcccctggccccatgggtggccgtggagaccccgga
ccgccaggtgccccgggtcttgctggcccctctggcccccagggaccttccggcctgaag
ggggagcctggagagacaggaccaccaggacggggcttgcctggacctactggggctgtg
ggattgcctggtcccccgggcccttcaggccttgtgggtccgcagggggcaccaggtttg
cctggacaagtgggggagacggggaagcccggagccccaggtcgcgatggtgccagtgga
agagatggagacagaggagcccctggtgtgccggggccaccaggtctgcccggccctgtc
ggacccaaaggagagcctggacccatgggggcccctggacaggctgtggtcgggccccct
ggagcaaagggagagaagggagcccctggaggccttgctggagacctggtgggcgagccg
ggagccaaaggtgaccgaggactgccagggctgcggggagagaagggtgatgccggccat
gcaggggagcctggagaccctggggaagatggtcagaaagggggtccaggactgaagggc
caaaagggtgacccaggagtcgggatccagggcccccctgggccagctggtcctccaggt
atgaagggagacttgggcctccccgggccccccggcgctcctggtgtcgtcggattccct
ggtcagacaggccctcgaggagagatgggtcagcccggccccagcggagagcggggtctg
gcaggcctcccagggagagaaggagccccaggccctttggggccacctggacccccaggg
ttagtgggagtgtctggggcccctggactcaaaggagacaagggagaccctggagcaggt
ctgcccggagcccgaggcgagcgtggggagccaggtgtccggggtgaagacggccggccc
ggccaggagggaccccgaggactcatggggcccccaggcagccgcggggagcatggggag
aagggtgacactggaactgcagggctaaagggtgacaagggtgactcagccgtgattttg
gggcctccggggccacgaggtgccaagggggacacgggtgaacgagggcctcggggcata
gatggtgacaaaggacctcggggagacactgggatccctggagagaagggtgtcaagggg
gagcctggcgacaaaggctcagcggggtcgctgggagtgcgtggactcacgggacccaag
ggcgagcctggtgttgcagggatccctggtgacctgggacctccagggaaggatggagcc
cctggtgtccgaggagacaaaggagatgttggcttcatgggtccccggggcctcaagggc
gaacggggagtgaagggcgcctgtggcctggatggagagaagggagacaagggagaaact
ggttccccgggccgccctgggctagcaggacgcaaaggagagatgggggagccaggtgtg
cccggccagttggggacccccggaagggagggcctgatcggtcccaagggcgaccgaggc
tttgatgggcagccaggacccaagggtgaccagggcgagaaaggggagcgggggccccca
ggaattggaggcttcccaggccccaagggcaatgatggctccagtggtccacctggacca
cctggcagtgttggtcccaaaggtcccgaaggacttcagggccagaagggtgagcgggga
ccccctggagagagtgtggtgggggcccctggagcccctgggacccctggcgagaggggg
gagcaggggcggccggggcccgctggtccccgtggtgagaaaggagaagctgcactgacg
gaggatgacattcggggctttgtgcgtcaggagatgagtcagcattgtgcttgccagggc
cagttcatcacgtctggatcatggcccctgcctagttatgctgcagacactgccggccca
cagctccaccgtgtgcccgtgctccgagtgtctcatgcagaggaggaaggccagctgccc
cccgaggatgacgagttctcggagtactctgagtattctgtggatgaatacaagaacctt
gaggctccctggaaaggtgaggatccttgcttgctgccactggacgagggctcctgtact
gcctacaccctgcgctggtatcaccgggctgtggcaggtggcacaggagcctgtcgcccc
ttcgtctatggcggctgtggaggcaatgacaaccgtttcgagacccatgaggcttgtgag
cgccgctgcccgccccgggtggtccagagccagggcacaggtatggccctacccctgctg
cagttggggactgggcaccgggcctacccagatcagctcccgggtgaggagcccccagac
cagagtcctgggtga
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integrated database retrieval system
