Trichechus manatus latirostris (Florida manatee): 101350419
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Entry
101350419 CDS
T05135
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101350419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101350419
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101350419
Spliceosome [BR:
tmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101350419
Complex C
U5 SnRNP specific factors
101350419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
101350419
NCBI-ProteinID:
XP_004388333
UniProt:
A0A2Y9E710
LinkDB
All DBs
Position
Unknown
AA seq
820 aa
AA seq
DB search
MAGELADKKDRDASPSKEERKRSRTPDRERERDRDRKSSPSKDRKRHRSRDRRRGGSRSR
SRSRSKSIERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRK
DRDSRKDEDDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQE
VEERQKMLEEERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREE
KDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLG
RGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQK
KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ
AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL
AQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVL
SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYR
QTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILE
QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA
TDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK
QAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagagctggctgataagaaggaccgtgatgcatcaccttccaaggaggaaagg
aagcgatctcggactcctgacagagagcgggaaagagaccgggaccggaagtcttctcca
tctaaggataggaagcggcatcgttcaagagatagacgtcgagggggcagccgttctcgc
tcccgttcacgttccaagtctatagaaagagaacgacggcacaaagaacgagaacgtgat
aaggagcgagatcggaacaagaaagaccgagatcgggacaaggatgggcacagaagggac
aaggaccgtaaacgatccagcttgtctcctggtcgaggaaaagattttaaatctcggaag
gacagagactccaggaaggatgaagacgatgaacatggtgataagaagcccaaggcccag
ccattatcactggaggaacttctggccaagaagaaggctgaagaagaagctgaggctaag
cccaagttcctctccaaagcagaacgagaggctgaagctctaaagcggcggcagcaagag
gtggaagagcggcagaaaatgcttgaagaggagaggaagaagaggaaacagttccaagac
ttgggcaggaagatgttggaagaccctcaggaacgagaacgtcgggaacgcagggagagg
atggagcgggagaccaatggcaatgaggatgaggaagggcggcagaagatccgggaagaa
aaggataagagcaaggaactgcatgccattaaggagcgttacctgggtggcatcaagaag
cggcgccgaactaggcatctcaatgatcgcaagtttgtctttgagtgggatgcatctgag
gacacatccatcgactacaaccccctgtacaaagaacggcaccaggtacagttgttgggg
cgaggcttcattgcaggcattgacctaaagcagcagaaacgagagcagtcacgtttctat
ggggacctaatggagaagaggcgaacactggaagagaaggagcaggaggaggcaagactc
cgcaaacttcgtaaaaaggaagccaagcagcgctgggatgatcggcattggtcccagaag
aagttggatgagatgacagacagggactggcggatcttccgtgaggactacagcatcacc
accaaaggtggcaagatccccaatcctatccgatcctggaaggactcttctctgcctcca
cacatcttggaggttattgataagtgtggctacaaggaaccaacgccaatccagcgtcag
gcaattcccattgggctgcagaatcgtgacatcattggtgtagctgagactggcagtggc
aagacagcagccttcctcatcccattgctggtctggatcaccactctccccaagattgac
aggatcgaagaatcagaccaaggcccttatgccatcatcctggcccctacccgtgagttg
gcccagcagattgaggaagagaccatcaaatttgggaagccgctgggcatccgcactgtg
gctgtcattggcggcatctccagagaagaccagggcttcaggctgcgcatgggttgtgag
attgtgattgctaccccgggacgtctgattgatgtgctggagaaccgctatctggtgctg
agccgctgtacctatgtggttctggatgaggcagataggatgattgacatgggctttgag
ccagacgtccagaagatcctggagcacatgcctgtcagcaaccagaagccagacacagat
gaggctgaagaccctgagaagatgttggccaactttgagtcagggaaacataagtaccgc
caaacagtcatgttcacggccaccatgcccccagcggtggagcgtctggcccggagctat
cttcggcgacctgctgtggtgtacattggctctgcaggcaagccccatgaacgagtggaa
cagaaggtcttcctcatgtcagagtcagaaaagaggaaaaagctgctggcaatcttggag
caaggctttgatccacccatcatcatttttgtcaaccagaagaagggctgtgatgtgttg
gccaaatccctggagaagatggggtacaatgcttgtacactgcatggtggaaaaggccag
gagcagcgagagtttgcactgtccaacctcaaggctggggccaaggatattttggtggct
acagacgtggctggtcgtggtatcgacatccaagatgtgtctatggttgtcaactatgat
atggccaaaaacattgaagattacatccaccggattggccgtacaggacgagcaggcaag
agtggtgtggccatcactttcctcaccaaagaggactctgctgtgttctatgagctgaag
caagccatcctggagagccctgtgtcctcctgtcctccagagctagccaaccacccagat
gcccagcacaagccaggcaccatcctcaccaagaagcgccgggaagagaccatctttgcc
tga
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