Trichechus manatus latirostris (Florida manatee): 101355897
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Entry
101355897 CDS
T05135
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04151
PI3K-Akt signaling pathway
tmu04510
Focal adhesion
tmu04512
ECM-receptor interaction
tmu04820
Cytoskeleton in muscle cells
tmu04926
Relaxin signaling pathway
tmu04933
AGE-RAGE signaling pathway in diabetic complications
tmu04974
Protein digestion and absorption
tmu05146
Amoebiasis
tmu05165
Human papillomavirus infection
tmu05200
Pathways in cancer
tmu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101355897
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101355897
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101355897
09142 Cell motility
04820 Cytoskeleton in muscle cells
101355897
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101355897
09154 Digestive system
04974 Protein digestion and absorption
101355897
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101355897
09162 Cancer: specific types
05222 Small cell lung cancer
101355897
09172 Infectious disease: viral
05165 Human papillomavirus infection
101355897
09174 Infectious disease: parasitic
05146 Amoebiasis
101355897
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101355897
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tmu04147
]
101355897
00536 Glycosaminoglycan binding proteins [BR:
tmu00536
]
101355897
Exosome [BR:
tmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101355897
Glycosaminoglycan binding proteins [BR:
tmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101355897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101355897
NCBI-ProteinID:
XP_004385891
UniProt:
A0A2Y9E2E9
LinkDB
All DBs
Position
Unknown
AA seq
1670 aa
AA seq
DB search
MLSGTKPRPPALLLRLLLVLLAAAPAAGKGCVCKDKGQCFCDGTKGEKGERGFAGPPGSP
GQKGFPGPEGLPGPQGPKGSPGLQGPTGPKGIRGITGLPGFSGPPGLPGIPGNTGPYGLP
GLPGCNGSKGAQGFPGLPGTPGYLGIPGPVGLKGEKGTPAEGSDIEIDGKGDPGLPGIPG
FQGLPGPPGFPGPMGPPGPPGFLGFPGTMGPPGPKGHMGDNMIGHKGDRGMKGLTGPPGP
PGTVIVTLTGPDNRTELKGEKGDKGAVGKSGPPGPPGLPGESYGSEKGNPGEPGLQGKPG
KDGIPGFPGTQGTKGDRGFPGLRGEYGIKGWKGNIGPPGFPGPTEYYDTYLEKGNEGSPG
PPGPKGARGPQGPSGPPGVPGSPGSSRPGLRGSPGPPGVRGSKGERGPPGNNAVGPPGSQ
GCPGSVGPEGLPGPPGPPGDIVFRKGPPGDSGIPGHLGPPGIPGRDGSKGEPGLLCTQCP
CIPGPPGLPGLPGLDGVKGIPGGRGAAGSKGNPGSPGSMGLPGFPGFPGVQGDPGFKGEK
GETSQPVGQVGAPGDTGSRGHPGRKGLDGIPGNPGLKGLPGPKGQMALSGEKGDQGPPGH
PGIPGPPGLAGPAGPPGSGPQGESGPKGKQGAPGAPGPPGEIGPKGELGVSTPVPGPPGF
PGPPGRSGPHGPPGIPGPMGKCDPGLPGLDGEPGIPGIGFPGPSGPKGDRGFPGAKGSAG
CPGEMGKPGLPGEPGLPGAKGEPGLAMPGEPGEPGFPGERGNAGENGEIGLPGLPGFPGI
PGNQGLDGPRGDPGRPGPHGEKGPPGGCMEGPRGAQGLPGLNGLKGQQGRRGETGSKGDP
GIPGLDRSGLTGEAGPPGMPGHRGEMGPPGQKGYPGNPGFPGPPGQRGMVGMMGFPGNIG
LPGLPGNPGHPGERGSLGIPGIKGEKGPPGVKGEQGNKGIPGPSQISHLPGDKGEAGLKG
FAGNPGQKGNTGIPGLPGLKGFQGLPGPPGPSGPRGDPGSIGNPGEPGPRGVPGSMGSMG
VPGSKGRRGSLGFPGLPGIPGLPGIHGLQGDKGDPGYSEDATPGPKGPQGDPGLPGDMGK
KGERGHPGPPGHSGPAGPEGIPGSSGSPGLPGKPGPDGDLGFKGIKGFPGSPGMRGPPGP
PGFPGSPGPMGVRGNQGHDGIPGPPGEKGEMGLPGALSGPKGNPGAQGAKGDRGAPGLPG
LPGRKGAVGDVGPPGPTGLTGFPGPPGVPGAIIPGQKGNRGPPGSRGNPGEPGPPGPPGS
PVKGIKGDKGFVGKPGPQGPPGTVGDTGLPGHPGPPGTPGLPGLRGDPGFRGFPGMQGEK
GNPGFLGSVGPPGPIGPPGPPGVRGDPGTLEIISLPGSPGPPGPPGGPGMQGEPGPPGPP
GNLGPCGPAGKPGKDGKPGTPGPAGGKGNKGSKGDKGPPGSDGLPGLKGRPGDTGPPATG
TSMRGFIFTRHSQTAAIPSCPEGTEPLYSGFSLLFVQGNERAHGQDLGTLGSCLQRFTTM
PFLFCNINDVCNFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCTVCEGPAIALAV
HSQTTAIPPCPQGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFLECHGRG
TCNYYSNSYSFWLASLNPKRMFRKPIPSTVKAGELEKIISRCQVCMKRMH
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgctctctgggacgaagccgaggccgccggcgctcctgctgcggctcctgctggtgctc
ctggcggcggcgcccgcagcgggcaagggttgtgtctgtaaagacaaaggccagtgtttc
tgcgatgggaccaaaggggagaagggcgaaagaggctttgctggaccccccggttctcct
ggccagaaaggattcccaggtcctgaaggcttgcctggaccacagggacccaagggttct
ccaggacttcaaggacccactggtcccaaaggcatcaggggaataactggtttaccagga
ttttcaggtcctccaggacttccaggcatcccaggcaatacaggaccttatggacttcct
ggtttaccaggatgcaatggttctaagggtgcgcaagggtttccaggacttccagggaca
ccaggctatctggggatcccgggtcctgttggtttgaaaggagaaaagggcaccccagct
gaaggaagtgatatagaaattgatggaaaaggtgaccctgggttgccaggaattccagga
ttccagggtttgccaggccctccaggttttcctggacctatgggtccacctggccctcca
ggtttcctgggctttccaggcaccatgggacctccaggacccaagggtcacatgggtgac
aacatgataggacataaaggagaccggggtatgaaaggattgacaggaccccctggacca
ccaggaacagttattgtgacactaactggcccagataacagaacggaactcaaaggggag
aagggagacaagggagcagtgggcaaatccggacctccaggacccccaggactgcctgga
gaatcatacggatcagaaaagggtaatcctggagaacctggcctgcagggaaagcctgga
aaagatggcatccctggcttccctggcacccagggaaccaaaggcgacaggggcttccct
ggattaaggggcgaatatggcattaaggggtggaaagggaacattggccctccaggattc
cctggtccgacagaatattatgacacatacctggaaaagggaaatgaaggaagtccaggc
cccccagggcccaaaggagctcgtggcccacagggtcccagtgggccccctggagttcct
ggaagtcctgggtcatcaaggcctggcctgagagggagccctggaccaccaggcgtgaga
ggaagcaaaggggagcgaggaccgccaggaaacaatgcagtggggcctcctgggtcccaa
ggttgtcctggttctgtaggccctgaagggctgccggggcccccaggtccaccaggtgac
attgtttttcgcaagggtcctcctggagatagtgggattccaggtcatctagggcctcca
ggaatcccaggacgtgatggatccaaaggagagccaggcctcctgtgcacacaatgtccg
tgtatcccagggcctccgggtctcccaggactgccgggactcgatggtgtcaaaggaatt
ccaggagggcgaggtgcagctggctctaaaggaaacccggggtccccaggaagtatgggt
cttccaggatttccaggattcccaggagttcagggtgatccaggatttaaaggagaaaaa
ggtgaaacatctcagcctgtggggcaagtgggtgccccaggagacactgggagcagaggt
catccaggaagaaagggcttggatggaattcctggaaatcccggactgaaaggattaccg
ggacctaaaggccaaatggccctgagtggtgagaagggtgaccagggtcctccagggcat
cctggcatccctgggcccccaggactggcaggaccagctggaccacctggctctggacct
caaggagagtcgggtccaaagggcaagcaaggagctcctggagcccctggaccaccagga
gaaatcggtcctaaaggagaactaggtgtttcaacaccagtcccaggccccccaggattt
ccagggccccctggccgatctggcccccatggtccacctggtatcccaggacccatggga
aaatgtgatccaggtctccctgggcttgatggtgaaccaggaattccaggaattggattt
cctgggccttctggacctaaaggagaccgaggttttccaggggcaaaaggatcagcgggt
tgccctggagaaatgggaaagcctggactgccaggagagccaggccttccaggagccaag
ggagaaccaggactagccatgcctggagaaccaggagaaccaggtttcccaggagaaaga
ggcaatgctggggaaaacggagaaattggactccctggacttccgggtttccctggaatc
ccaggaaaccaagggcttgatggaccacgaggagatccaggaaggcctggaccacatgga
gaaaaaggacccccaggagggtgcatggagggccccaggggagctcaaggactaccaggc
ttaaatggattgaaagggcaacaaggaagaagaggcgaaacaggttccaagggagaccca
ggtataccaggcttggataggtcaggacttactggagaagctgggccaccaggaatgcca
ggtcatcgaggtgagatgggaccacctggtcaaaaaggatacccaggaaatccaggattt
ccagggccaccagggcaaagaggaatggttggaatgatgggctttcctggaaatatcggc
cttccagggcttcctgggaacccaggacacccaggagagaggggtagccttggaattcca
ggaataaagggtgaaaaaggacctccaggagtcaaaggggagcaaggaaataaaggaatt
cctgggccttctcaaatatcccacttaccaggggacaaaggagaagcaggtctcaaagga
tttgcaggaaacccgggtcagaaaggaaacacaggtattccagggttaccaggtttaaaa
ggcttccaagggctgccaggaccaccagggccatcaggccccagaggagacccgggcagc
attgggaatcctggagaaccaggaccacgtggtgtgccagggagcatggggagcatggga
gtgccaggctccaaaggaaggagaggaagtttgggattcccaggtctacctggaatacca
ggcctcccaggcattcatggtctccaaggagataagggagatccaggttattcagaagat
gcaacgccaggaccaaagggaccacagggggatccaggtttgccaggtgacatgggaaag
aaaggagaaagagggcaccccggcccccctggacattcggggcctgctggacctgagggc
atccctggaagttccgggagccctggcctcccaggaaagccaggtcctgatggtgatttg
gggtttaaaggaatcaaaggcttccctggctctccaggaatgagaggccccccaggccct
ccaggattcccaggatctcctgggccaatgggtgtaagaggtaaccaaggacatgatgga
attcctggtccacctggagaaaaaggagaaatgggtttgccgggggcactttctggtcca
aaaggaaaccctggtgctcaaggagccaaaggagacaggggagccccaggcttgcctggc
ttgccaggcaggaaaggggcagtgggagatgttgggccgccaggacccactggcctaaca
ggattcccagggccaccaggtgtcccaggtgcaatcatccctggccaaaaaggaaatcga
ggtccaccaggctcaagaggaaacccaggtgaacctggtccacctggacctccagggagt
cctgtaaaaggcataaaaggagataaaggatttgtgggcaagcctggcccccaaggtcca
cctggaaccgtgggagacacagggttaccaggtcatccgggaccaccaggcaccccaggt
ctcccagggctcagaggtgatcccgggttccgtggatttccgggcatgcaaggagagaag
ggtaatccaggatttctgggatcagttgggcctccagggccaattgggcctccaggacca
cctggtgtacgtggagatcctggcacacttgagatcatctcccttccaggaagcccaggg
cctcctggcccacctggaggaccagggatgcagggagagcctgggccaccagggccacca
ggaaacctaggaccctgtgggccagcaggtaaaccaggcaaggatggaaaacctggaacc
cccggaccagctggaggaaaaggcaacaaaggttctaaaggagacaaagggccacctgga
tcagatggattgccaggtttaaagggaagaccaggagacactggaccacctgccactggg
acatcaatgagaggctttatcttcactcgacatagccaaacagcagcaattccttcatgt
ccagaagggacagagccactctacagtggtttttctctcctttttgtacaaggaaacgaa
cgagcccatggacaagaccttggaactcttggcagctgcctgcagcgctttaccacaatg
ccattcttattctgtaacatcaatgatgtatgcaattttgcatctcgaaacgattattca
tactggctgtcaaccccagccctgatgccaatggacatggctccaattactggcagggcc
cttgagccttatattagcagatgtactgtctgtgaaggtcctgcgattgccttagccgtt
cacagccaaaccaccgccatccctccatgccctcagggctggatttcactctggaaagga
ttttcttttataatgttcacaagtgcaggttcagagggtgctgggcaagcactggcctcc
cccggctcctgcctggaagaattccgagccagtccctttctagaatgtcatggaagagga
acgtgcaactactattcaaattcttacagtttctggttggcttctttaaacccaaaaaga
atgttcagaaaacctattccatcaacagtgaaagctggggagttagaaaagataataagt
cgttgccaggtgtgcatgaagagaatgcattga
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integrated database retrieval system